Mir-1-P1

MirGeneDB ID

Xtr-Mir-1-P1

Family name

MIR-1 (all species)

Seed

GGAAUGU

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-1a-1

Paralogues

Xtr-Mir-1-P2 Xtr-Mir-1-P3 Xtr-Mir-1-P4

Orthologues

Aae-Mir-1 Aca-Mir-1-P1 Aga-Mir-1 Agr-Mir-1 Ami-Mir-1-P1 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Bta-Mir-1-P1 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P1 Cin-Mir-1 Cja-Mir-1-P1 Cli-Mir-1-P1 Cmi-Mir-1-P1 Cpi-Mir-1-P1 Cpo-Mir-1-P1 Cte-Mir-1 Dan-Mir-1 Dgr-Mir-1 Dlo-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P1 Dpu-Mir-1 Dre-Mir-1-P1 Dsi-Mir-1 Dya-Mir-1 Eba-Mir-1 Eca-Mir-1-P1 Egr-Mir-1 Esc-Mir-1 Ete-Mir-1-P1 Gga-Mir-1-P1 Gja-Mir-1-P1 Gmo-Mir-1-P1 Gpa-Mir-1 Gsa-Mir-1 Gsp-Mir-1 Hme-Mir-1 Hmi-Mir-1 Hru-Mir-1 Hsa-Mir-1-P1 Isc-Mir-1 Laf-Mir-1-P1 Lan-Mir-1 Lch-Mir-1-P1 Lgi-Mir-1 Lhy-Mir-1 Llo-Mir-1 Loc-Mir-1-P1 Mal-Mir-1-P1 Mdo-Mir-1-P1 Mgi-Mir-1 Mml-Mir-1-P1 Mmr-Mir-1-P1 Mmu-Mir-1-P1 Mom-Mir-1 Mun-Mir-1-P1 Neu-Mir-1-P1 Oan-Mir-1-P1 Obi-Mir-1 Ocu-Mir-1-P1 Ofu-Mir-1 Ovu-Mir-1 Pab-Mir-1-P1 Pau-Mir-1 Pbv-Mir-1-P1 Pca-Mir-1 Pcr-Mir-1 Pdu-Mir-1 Pfl-Mir-1 Ple-Mir-1 Pma-Mir-1-o1 Pmi-Mir-1 Rno-Mir-1-P1 Rph-Mir-1 Sha-Mir-1-P1 Sko-Mir-1 Sma-Mir-1 Sne-Mir-1 Snu-Mir-1 Spt-Mir-1-P1 Spu-Mir-1 Sro-Mir-1 Sto-Mir-1-P1 Tca-Mir-1 Tgu-Mir-1-P1 Tni-Mir-1-P1 Tur-Mir-1 War-Mir-1 Xbo-Mir-1 Xla-Mir-1-P1a Xla-Mir-1-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(xenTro9_add)

chr6: 93553291-93553351 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1-P1)

Mir-133-P1-v1 chr6: 93550870-93550929 [-] UCSC Ensembl
Mir-133-P1-v2 chr6: 93550870-93550929 [-] UCSC Ensembl
Mir-1-P1 chr6: 93553291-93553351 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCAAAGAGCUUAUAUCUACCUGUUUGGAGUACAUACUUCUUUAUGUACCCAUAUGAACAUACAAUGCUAUGGAAUGUAAAGAAGUAUGUAUUUUUAUCAGGUACUGAACACCGGCCAAAGC

Get precursor sequence

Structure

        10          20        30        40        50        60
CCAAAGAGCUUAUAUCU--|    UUU                     AC     UGAACA 
                   ACCUG   GGAGUACAUACUUCUUUAUGU  CCAUA      U
                   UGGAC   UUUUAUGUAUGAAGAAAUGUA  GGUAU      A
CGAAACCGGCCACAAGUCA^    UAU                     A-     CGUAAC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	Br	Em	Em	He	Ve

Star sequence

Xtr-Mir-1-P1_5p*

mirBase accession

None

Sequence

0- ACAUACUUCUUUAUGUACCCAUA -23

Get sequence

Mature sequence

Xtr-Mir-1-P1_3p

mirBase accession

MIMAT0003551

Sequence

39- UGGAAUGUAAAGAAGUAUGUAU -61

Get sequence

Proposed targets

TargetScanVert: xtr-miR-1a