MirGeneDB ID | Pma-Mir-1-o1 |
Family name |
MIR-1 (all species) |
Seed |
GGAAUGU |
Species |
Sea Lamprey (Petromyzon marinus) |
MiRBase ID |
pma-mir-1a
|
Paralogues |
Pma-Mir-1-o2
Pma-Mir-1-o3
Pma-Mir-1-o4
|
Orthologues |
Aae-Mir-1
Aca-Mir-1-P1
Ami-Mir-1-P1
Asu-Mir-1
Bfl-Mir-1
Bge-Mir-1
Bla-Mir-1
Bta-Mir-1-P1
Cbr-Mir-1
Cel-Mir-1
Cfa-Mir-1-P1
Cgi-Mir-1
Cin-Mir-1
Cli-Mir-1-P1
Cmi-Mir-1-P1
Cpi-Mir-1-P1
Cpo-Mir-1-P1
Cte-Mir-1
Dan-Mir-1
Dma-Mir-1
Dme-Mir-1
Dmo-Mir-1
Dno-Mir-1-P1
Dpu-Mir-1
Dre-Mir-1-P1
Dsi-Mir-1
Dya-Mir-1
Esc-Mir-1
Ete-Mir-1-P1
Gga-Mir-1-P1
Gja-Mir-1-P1
Gmo-Mir-1-P1
Hme-Mir-1
Hsa-Mir-1-P1
Isc-Mir-1
Lan-Mir-1
Lch-Mir-1-P1
Lgi-Mir-1
Loc-Mir-1-P1
Mal-Mir-1-P1
Mdo-Mir-1-P1
Mml-Mir-1-P1
Mmu-Mir-1-P1
Mun-Mir-1-P1
Oan-Mir-1-P1
Obi-Mir-1
Ocu-Mir-1-P1
Ovu-Mir-1
Pbv-Mir-1-P1
Pfl-Mir-1
Pmi-Mir-1
Rno-Mir-1-P1
Sha-Mir-1-P1
Sko-Mir-1
Spt-Mir-1-P1
Spu-Mir-1
Sto-Mir-1-P1
Tca-Mir-1
Tgu-Mir-1-P1
Tni-Mir-1-P1
Xbo-Mir-1
Xla-Mir-1-P1a
Xla-Mir-1-P1b
Xtr-Mir-1-P1
|
Node of Origin (locus) |
P. marinus
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046083.1: 5668447-5668507 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCUCCGCCACGUGGUGAUUCGGCUGAGGCAAUGUGCCUCUUUACGUCCCCAUACGCAGCUCUGAGUCUAUGGAAUGUAAAGAAGUACGUUGCUUCGGCGGAGCUGAGCGACCCGGCCCGAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCUCCGCCACGUGGUGA--| G C CC ACGCAGC
UUC GCUGAGGCAAUGUGC UCUUUACGU CCAU U
GAG CGGCUUCGUUGCAUG AGAAAUGUA GGUA C
CAGCCCGGCCCAGCGAGUC^ G A A- UCUGAGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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Star sequence |
Pma-Mir-1-o1_5p* |
mirBase accession | MIMAT0019364 |
Sequence |
0- AUGUGCCUCUUUACGUCCCCAU -22
Get sequence
|
Mature sequence |
Pma-Mir-1-o1_3p |
mirBase accession | MIMAT0019365 |
Sequence |
39- UGGAAUGUAAAGAAGUACGUUG -61
Get sequence
|