MirGeneDB 2.1
MirGeneDB ID

Loc-Mir-1-P1

Family name MIR-1 (all species)
Seed GGAAUGU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-1-P2  Loc-Mir-1-P3 
Orthologues Aae-Mir-1  Aca-Mir-1-P1  Ami-Mir-1-P1  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Bta-Mir-1-P1  Cbr-Mir-1  Cel-Mir-1  Cfa-Mir-1-P1  Cgi-Mir-1  Cin-Mir-1  Cli-Mir-1-P1  Cmi-Mir-1-P1  Cpi-Mir-1-P1  Cpo-Mir-1-P1  Cte-Mir-1  Dan-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dno-Mir-1-P1  Dpu-Mir-1  Dre-Mir-1-P1  Dsi-Mir-1  Dya-Mir-1  Esc-Mir-1  Ete-Mir-1-P1  Gga-Mir-1-P1  Gja-Mir-1-P1  Gmo-Mir-1-P1  Hme-Mir-1  Hsa-Mir-1-P1  Isc-Mir-1  Lan-Mir-1  Lch-Mir-1-P1  Lgi-Mir-1  Mal-Mir-1-P1  Mdo-Mir-1-P1  Mml-Mir-1-P1  Mmu-Mir-1-P1  Mun-Mir-1-P1  Oan-Mir-1-P1  Obi-Mir-1  Ocu-Mir-1-P1  Ovu-Mir-1  Pbv-Mir-1-P1  Pfl-Mir-1  Pma-Mir-1-o1  Pmi-Mir-1  Rno-Mir-1-P1  Sha-Mir-1-P1  Sko-Mir-1  Spt-Mir-1-P1  Spu-Mir-1  Sto-Mir-1-P1  Tca-Mir-1  Tgu-Mir-1-P1  Tni-Mir-1-P1  Xbo-Mir-1  Xla-Mir-1-P1a  Xla-Mir-1-P1b  Xtr-Mir-1-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LepOcu1)		 LG9: 563078-563139 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CGGGCUGUCAUUUAUCCGCCUAUCCGGAGUACAUACUUCUUUAUGUACCCAUAUGGACAUAUGAAAGCUAUGGAAUGUAAAGAAGUAUGUAUUUUUGAUCAGGCACUGAGCGACGAAGCCAG
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Structure
        10         20         30        40        50        60 
CGGGCUGUCAUUUAUCC-    -|  CG                    AC     UGGACAU 
                  GCCU AUC  GAGUACAUACUUCUUUAUGU  CCAUA       \
                  CGGA UAG  UUUAUGUAUGAAGAAAUGUA  GGUAU       A
GACCGAAGCAGCGAGUCA    C^  UU                    A-     CGAAAGU 
120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-1-P1_5p*
mirBase accessionNone
Sequence 
0- ACAUACUUCUUUAUGUACCCAUA -23
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Mature sequence

Loc-Mir-1-P1_3p
mirBase accessionNone
Sequence 
40- UGGAAUGUAAAGAAGUAUGUAU -62
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