MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-1-P1

Family name MIR-1 (all species)
Seed GGAAUGU
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-1-P2  Lch-Mir-1-P3  Lch-Mir-1-P4 
Orthologues Aae-Mir-1  Aca-Mir-1-P1  Aga-Mir-1  Agr-Mir-1  Ami-Mir-1-P1  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Bta-Mir-1-P1  Cbr-Mir-1  Cel-Mir-1  Cfa-Mir-1-P1  Cin-Mir-1  Cja-Mir-1-P1  Cli-Mir-1-P1  Cmi-Mir-1-P1  Cpi-Mir-1-P1  Cpo-Mir-1-P1  Cte-Mir-1  Dan-Mir-1  Dgr-Mir-1  Dlo-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dno-Mir-1-P1  Dpu-Mir-1  Dre-Mir-1-P1  Dsi-Mir-1  Dya-Mir-1  Eba-Mir-1  Eca-Mir-1-P1  Egr-Mir-1  Esc-Mir-1  Ete-Mir-1-P1  Gga-Mir-1-P1  Gja-Mir-1-P1  Gmo-Mir-1-P1  Gpa-Mir-1  Gsa-Mir-1  Gsp-Mir-1  Hme-Mir-1  Hmi-Mir-1  Hru-Mir-1  Hsa-Mir-1-P1  Isc-Mir-1  Laf-Mir-1-P1  Lan-Mir-1  Lgi-Mir-1  Lhy-Mir-1  Llo-Mir-1  Loc-Mir-1-P1  Mal-Mir-1-P1  Mdo-Mir-1-P1  Mgi-Mir-1  Mml-Mir-1-P1  Mmr-Mir-1-P1  Mmu-Mir-1-P1  Mom-Mir-1  Mun-Mir-1-P1  Neu-Mir-1-P1  Oan-Mir-1-P1  Obi-Mir-1  Ocu-Mir-1-P1  Ofu-Mir-1  Ovu-Mir-1  Pab-Mir-1-P1  Pau-Mir-1  Pbv-Mir-1-P1  Pca-Mir-1  Pcr-Mir-1  Pdu-Mir-1  Pfl-Mir-1  Ple-Mir-1  Pma-Mir-1-o1  Pmi-Mir-1  Rno-Mir-1-P1  Rph-Mir-1  Sha-Mir-1-P1  Sko-Mir-1  Sma-Mir-1  Sne-Mir-1  Snu-Mir-1  Spt-Mir-1-P1  Spu-Mir-1  Sro-Mir-1  Sto-Mir-1-P1  Tca-Mir-1  Tgu-Mir-1-P1  Tni-Mir-1-P1  Tur-Mir-1  War-Mir-1  Xbo-Mir-1  Xla-Mir-1-P1a  Xla-Mir-1-P1b  Xtr-Mir-1-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LatCha1_add)		 BAHO01228262.1: 6305-6365 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGAAACACAACCCUUCCACCUGCCCAGAACACAUACUUCUUUAUGUACCCAUAUGAACAUAUGAUGCUAUGGAAUGUAAAGAAGUAUGUAUUUUUGGUGGGAAUUGAACAACGGAGAGCCA
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Structure
        10          20        30        40        50        60
UGAAACACAACCCUUCCA--| UG  C    C                AC     UGAACA 
                    CC  CC AGAA ACAUACUUCUUUAUGU  CCAUA      U
                    GG  GG UUUU UGUAUGAAGAAAUGUA  GGUAU      A
ACCGAGAGGCAACAAGUUAA^ GU  U    A                A-     CGUAGU 
 .       110       100        90        80         70
Deep sequencing
CommentNot in assembly but in trace archive.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Lch-Mir-1-P1_5p* (predicted)
mirBase accessionNone
Sequence 
0- ACAUACUUCUUUAUGUACCCAUA -23
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Mature sequence

Lch-Mir-1-P1_3p (predicted)
mirBase accessionNone
Sequence 
39- UGGAAUGUAAAGAAGUAUGUAU -61
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