Mir-1-P1

MirGeneDB ID

Gja-Mir-1-P1

Family name

MIR-1 (all species)

Seed

GGAAUGU

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-1-P2e Gja-Mir-1-P2f Gja-Mir-1-P3 Gja-Mir-1-P4c Gja-Mir-1-P4d

Orthologues

Aae-Mir-1 Aca-Mir-1-P1 Ami-Mir-1-P1 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Bta-Mir-1-P1 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P1 Cgi-Mir-1 Cin-Mir-1 Cli-Mir-1-P1 Cmi-Mir-1-P1 Cpi-Mir-1-P1 Cpo-Mir-1-P1 Cte-Mir-1 Dan-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P1 Dpu-Mir-1 Dre-Mir-1-P1 Dsi-Mir-1 Dya-Mir-1 Esc-Mir-1 Ete-Mir-1-P1 Gga-Mir-1-P1 Gmo-Mir-1-P1 Hme-Mir-1 Hsa-Mir-1-P1 Isc-Mir-1 Lan-Mir-1 Lch-Mir-1-P1 Lgi-Mir-1 Loc-Mir-1-P1 Mal-Mir-1-P1 Mdo-Mir-1-P1 Mml-Mir-1-P1 Mmu-Mir-1-P1 Mun-Mir-1-P1 Oan-Mir-1-P1 Obi-Mir-1 Ocu-Mir-1-P1 Ovu-Mir-1 Pbv-Mir-1-P1 Pfl-Mir-1 Pma-Mir-1-o1 Pmi-Mir-1 Rno-Mir-1-P1 Sha-Mir-1-P1 Sko-Mir-1 Spt-Mir-1-P1 Spu-Mir-1 Sto-Mir-1-P1 Tca-Mir-1 Tgu-Mir-1-P1 Tni-Mir-1-P1 Xbo-Mir-1 Xla-Mir-1-P1a Xla-Mir-1-P1b Xtr-Mir-1-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015169808.1: 43186-43246 [-]

Precursor
(pre-Mir +30nt flank)

GCUCUACAGUUACUAAAACCUGCACAGAGCACAUACUUCUUUAUGUACCCAUAUGAAGAUACAGUGCUAUGGAAUGUAAAGAAGUAUGUAUUUUUGGCAGGUGUGAACUACCAGUAACAGA

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Structure

        10          20        30         40        50        60
GCUCUACAGUUACUAAA--|     A     C-                AC     UGAAGA 
                   ACCUGC CAGAG  ACAUACUUCUUUAUGU  CCAUA      U
                   UGGACG GUUUU  UGUAUGAAGAAAUGUA  GGUAU      A
AGACAAUGACCAUCAAGUG^     -     UA                A-     CGUGAC 
 .       110       100         90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Gja-Mir-1-P1_5p*

mirBase accession

None

Sequence

0- ACAUACUUCUUUAUGUACCCAUA -23

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Mature sequence

Gja-Mir-1-P1_3p

mirBase accession

None

Sequence

39- UGGAAUGUAAAGAAGUAUGUAU -61

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