| MirGeneDB ID | Lch-Mir-1-P3 |
|---|---|
| Family name | MIR-1 (all species) |
| Seed | GGAAUGU |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-1-P1 Lch-Mir-1-P2 Lch-Mir-1-P4 |
| Orthologues | Aae-Mir-1 Aca-Mir-1-P3 Ami-Mir-1-P3 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Bta-Mir-1-P3 Cbr-Mir-1 Cel-Mir-1 Cfa-Mir-1-P3 Cgi-Mir-1 Cin-Mir-1 Cli-Mir-1-P3 Cmi-Mir-1-P3 Cpi-Mir-1-P3 Cpo-Mir-1-P3 Cte-Mir-1 Dan-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dno-Mir-1-P3 Dpu-Mir-1 Dre-Mir-1-P3 Dsi-Mir-1 Dya-Mir-1 Esc-Mir-1 Ete-Mir-1-P3 Gga-Mir-1-P3 Gja-Mir-1-P3 Gmo-Mir-1-P3 Hme-Mir-1 Hsa-Mir-1-P3 Isc-Mir-1 Lan-Mir-1 Lgi-Mir-1 Loc-Mir-1-P3 Mal-Mir-1-P3 Mdo-Mir-1-P3 Mml-Mir-1-P3 Mmu-Mir-1-P3 Mun-Mir-1-P3 Oan-Mir-1-P3 Obi-Mir-1 Ocu-Mir-1-P3 Ovu-Mir-1 Pbv-Mir-1-P3 Pfl-Mir-1 Pma-Mir-1-o3 Pmi-Mir-1 Rno-Mir-1-P3 Sha-Mir-1-P3 Sko-Mir-1 Spt-Mir-1-P3 Spu-Mir-1 Sto-Mir-1-P3 Tca-Mir-1 Tgu-Mir-1-P3 Tni-Mir-1-P3 Xbo-Mir-1 Xla-Mir-1-P3a Xla-Mir-1-P3b Xtr-Mir-1-P3 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Bilateria |
| Genome context (LatCha1_add) |
JH126883.1: 1364534-1364594 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | CACGCGUACUGAAAAAUGCCUGCUUGAGGGACAUACUUCUUUAUAUACCCAUAUGAACCUGUCUAGCUAUGGAAUGUAAAGAAGUAUGUAUUUCAGGUAGGGAAUCCUACUCGGCGAAGAAGet precursor sequence |
| Structure | 10 20 30 40 50 60 CACGCGUACUGAAAAAUG--| G AC UGAACC CCUGCUUGAGG ACAUACUUCUUUAUAU CCAUA U GGAUGGACUUU UGUAUGAAGAAAUGUA GGUAU G AAGAAGCGGCUCAUCCUAAG^ A A- CGAUCU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Lch-Mir-1-P3_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- ACAUACUUCUUUAUAUACCCAUA -23
Get sequence
|
| Mature sequence | Lch-Mir-1-P3_3p (predicted) |
| mirBase accession | None |
| Sequence |
39- UGGAAUGUAAAGAAGUAUGUAU -61
Get sequence
|
