MirGeneDB ID | Pma-Mir-1-o2 |
Family name |
MIR-1 (all species) |
Seed |
GGAAUGU |
Species |
Sea Lamprey (Petromyzon marinus) |
MiRBase ID |
pma-mir-1b
|
Paralogues |
Pma-Mir-1-o1
Pma-Mir-1-o3
Pma-Mir-1-o4
|
Orthologues |
Aae-Mir-1
Aca-Mir-1-P2
Ami-Mir-1-P2
Asu-Mir-1
Bfl-Mir-1
Bge-Mir-1
Bla-Mir-1
Bta-Mir-1-P2
Cbr-Mir-1
Cel-Mir-1
Cfa-Mir-1-P2
Cgi-Mir-1
Cin-Mir-1
Cli-Mir-1-P2
Cpi-Mir-1-P2
Cpo-Mir-1-P2
Cte-Mir-1
Dan-Mir-1
Dma-Mir-1
Dme-Mir-1
Dmo-Mir-1
Dno-Mir-1-P2
Dpu-Mir-1
Dre-Mir-1-P2a
Dre-Mir-1-P2b
Dsi-Mir-1
Dya-Mir-1
Esc-Mir-1
Ete-Mir-1-P2
Gga-Mir-1-P2
Gja-Mir-1-P2e
Gja-Mir-1-P2f
Gmo-Mir-1-P2a
Hme-Mir-1
Hsa-Mir-1-P2
Isc-Mir-1
Lan-Mir-1
Lch-Mir-1-P2
Lgi-Mir-1
Loc-Mir-1-P2
Mal-Mir-1-P2a
Mdo-Mir-1-P2
Mml-Mir-1-P2
Mmu-Mir-1-P2
Mun-Mir-1-P2
Oan-Mir-1-P2
Obi-Mir-1
Ocu-Mir-1-P2
Ovu-Mir-1
Pbv-Mir-1-P2
Pfl-Mir-1
Pmi-Mir-1
Rno-Mir-1-P2
Sha-Mir-1-P2
Sko-Mir-1
Spt-Mir-1-P2
Spu-Mir-1
Tca-Mir-1
Tgu-Mir-1-P2
Tni-Mir-1-P2a
Xbo-Mir-1
Xla-Mir-1-P2c
Xla-Mir-1-P2d
Xtr-Mir-1-P2
|
Node of Origin (locus) |
P. marinus
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046080.1: 13837276-13837337 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAGUUACGGAGAAUAAAUCCCAGCCAGAGCACGUACUUCUUUAUAAAGCCACGUGCGCGAGCUGGGAUCGUGGAAUGUAAAGAAGUAUGGGUUCUGGGUGGGAAUCAGCAGCACAUUCUCAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAGUUACGGAGAAUAAA--| G A AAG UGCGCGA
UCCCA CCAGAGC CGUACUUCUUUAUA CCACG \
AGGGU GGUCUUG GUAUGAAGAAAUGU GGUGC G
UACUCUUACACGACGACUA^ G G AA- UAGGGUC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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Star sequence |
Pma-Mir-1-o2_5p* |
mirBase accession | None |
Sequence |
0- ACGUACUUCUUUAUAAAGCCACG -23
Get sequence
|
Mature sequence |
Pma-Mir-1-o2_3p |
mirBase accession | MIMAT0019366 |
Sequence |
40- UGGAAUGUAAAGAAGUAUGGGU -62
Get sequence
|