Mir-1-P4

MirGeneDB ID

Xtr-Mir-1-P4

Family name

MIR-1 (all species)

Seed

GGAAUGU

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-1b

Paralogues

Xtr-Mir-1-P1 Xtr-Mir-1-P2 Xtr-Mir-1-P3

Orthologues

Aae-Mir-1 Aca-Mir-1-P4 Aga-Mir-1 Agr-Mir-1 Ami-Mir-1-P4 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Cbr-Mir-1 Cel-Mir-1 Cin-Mir-1 Cli-Mir-1-P4 Cmi-Mir-1-P4 Cpi-Mir-1-P4 Cte-Mir-1 Dan-Mir-1 Dgr-Mir-1 Dlo-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dpu-Mir-1 Dsi-Mir-1 Dya-Mir-1 Eba-Mir-1 Egr-Mir-1 Esc-Mir-1 Gga-Mir-1-P4 Gja-Mir-1-P4c Gja-Mir-1-P4d Gpa-Mir-1 Gsa-Mir-1 Gsp-Mir-1 Hme-Mir-1 Hmi-Mir-1 Hru-Mir-1 Isc-Mir-1 Lan-Mir-1 Lch-Mir-1-P4 Lgi-Mir-1 Lhy-Mir-1 Llo-Mir-1 Mgi-Mir-1 Mom-Mir-1 Mun-Mir-1-P4 Oan-Mir-1-P4 Obi-Mir-1 Ofu-Mir-1 Ovu-Mir-1 Pau-Mir-1 Pbv-Mir-1-P4 Pca-Mir-1 Pcr-Mir-1 Pdu-Mir-1 Pfl-Mir-1 Ple-Mir-1 Pma-Mir-1-o4 Pmi-Mir-1 Rph-Mir-1 Sko-Mir-1 Sma-Mir-1 Sne-Mir-1 Snu-Mir-1 Spt-Mir-1-P4 Spu-Mir-1 Sro-Mir-1 Sto-Mir-1-P4 Tca-Mir-1 Tgu-Mir-1-P4 Tur-Mir-1 War-Mir-1 Xbo-Mir-1 Xla-Mir-1-P4a Xla-Mir-1-P4b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(xenTro9_add)

chr2: 56468864-56468924 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1-P4)

Mir-133-P4-v1 chr2: 56468434-56468492 [-] UCSC Ensembl
Mir-133-P4-v2 chr2: 56468434-56468492 [-] UCSC Ensembl
Mir-1-P4 chr2: 56468864-56468924 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUCAGUGGCUUUGAUGUCCACCUUUAGGGCACAUACUUCUUUAUAUGCCCAUACUGAAUGAAAAUGCUAUGGAAUGUUAAGAAGUAUGUAACCUAAGGGGUUGCCUUUUCAUCUGCGCCAC

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Structure

        10        20          30        40        50        60
UUCAGUGGCUUUGAUGUCCA--|       GC           U    GC     CUGAAU 
                      CCUUUAGG  ACAUACUUCUU AUAU  CCAUA      G
                      GGGAAUCC  UGUAUGAAGAA UGUA  GGUAU      A
CACCGCGUCUACUUUUCCGUUG^       AA           U    A-     CGUAAA 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

An	Br	Em	Em	He	Ve

Star sequence

Xtr-Mir-1-P4_5p*

mirBase accession

None

Sequence

0- ACAUACUUCUUUAUAUGCCCAUA -23

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Mature sequence

Xtr-Mir-1-P4_3p

mirBase accession

MIMAT0003648

Sequence

39- UGGAAUGUUAAGAAGUAUGUAA -61

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Proposed targets

TargetScanVert: xtr-miR-1b