Mir-133-P4-v2

MirGeneDB ID

Xtr-Mir-133-P4-v2

Family name

MIR-133 (all species)

Seed

UGGUCCC

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-133d

Paralogues

Xtr-Mir-133-P1-v1 Xtr-Mir-133-P1-v2 Xtr-Mir-133-P2-v1 Xtr-Mir-133-P2-v2 Xtr-Mir-133-P3-v1 Xtr-Mir-133-P3-v2 Xtr-Mir-133-P4-v1

Orthologues

Aae-Mir-133 Aca-Mir-133-P4-v1 Aca-Mir-133-P4-v2 Aga-Mir-133 Ami-Mir-133-P4-v1 Ami-Mir-133-P4-v2 Asu-Mir-133 Bge-Mir-133 Cbr-Mir-133 Cel-Mir-133 Cin-Mir-133 Cli-Mir-133-P4-v1 Cli-Mir-133-P4-v2 Cmi-Mir-133-P4-v1 Cmi-Mir-133-P4-v2 Cpi-Mir-133-P4-v1 Cpi-Mir-133-P4-v2 Cte-Mir-133 Dan-Mir-133 Dgr-Mir-133 Dlo-Mir-133 Dma-Mir-133 Dme-Mir-133 Dmo-Mir-133 Dpu-Mir-133 Dsi-Mir-133 Dya-Mir-133 Eba-Mir-133 Efe-Mir-133 Egr-Mir-133 Esc-Mir-133 Gga-Mir-133-P4-v1 Gga-Mir-133-P4-v2 Gja-Mir-133-P4-v1 Gja-Mir-133-P4-v2 Gpa-Mir-133 Gsp-Mir-133 Hme-Mir-133 Hru-Mir-133 Isc-Mir-133 Lan-Mir-133 Lch-Mir-133-P4 Lgi-Mir-133 Lhy-Mir-133 Llo-Mir-133 Mgi-Mir-133 Mom-Mir-133 Mun-Mir-133-P4-v1 Mun-Mir-133-P4-v2 Oan-Mir-133-P4-v1 Oan-Mir-133-P4-v2 Obi-Mir-133 Ofu-Mir-133 Ovu-Mir-133 Pau-Mir-133 Pbv-Mir-133-P4-v1 Pbv-Mir-133-P4-v2 Pca-Mir-133 Pcr-Mir-133 Pdu-Mir-133 Pma-Mir-133-o4-v1 Pma-Mir-133-o4-v2 Pve-Mir-133 Rph-Mir-133 Sma-Mir-133 Snu-Mir-133 Spt-Mir-133-P4 Spu-Mir-133 Sto-Mir-133-P4-v1 Sto-Mir-133-P4-v2 Tca-Mir-133 Tgu-Mir-133-P4-v1 Tgu-Mir-133-P4-v2 Tur-Mir-133 War-Mir-133 Xbo-Mir-133 Xla-Mir-133-P4a Xla-Mir-133-P4b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(xenTro9_add)

chr2: 56468434-56468492 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-133-P4-v2)

Mir-133-P4-v1 chr2: 56468434-56468492 [-] UCSC Ensembl
Mir-133-P4-v2 chr2: 56468434-56468492 [-] UCSC Ensembl
Mir-1-P4 chr2: 56468864-56468924 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCCAAAAAAAGGAUAGGCUGUCUGGUUGCGGCUGGUGAAAAGGAACCACAUCAACCCAGAAAAAGGAUUUGGUCCCCUUCAACCAGCCGCAACUGGUCAGGAUUGCAAUAGGUCACUGG

Get precursor sequence

Structure

        10          20        30         40        50         
GCCAAAAAAAGGAUAGG--   U UG           -|   AA   A   C  CAACCCA 
                   CUG C  GUUGCGGCUGG UGAA  GGA CCA AU       \
                   GAC G  CAACGCCGACC ACUU  CCU GGU UA       G
GGUCACUGGAUAACGUUAG   U GU           A^   CC   -   U  GGAAAAA 
       110       100        90        80         70        60

Deep sequencing

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3' NTU

Yes

Motifs

Tissue expression

An	Br	Em	Em	He	Ve

Star sequence

Xtr-Mir-133-P4-v2_5p* (predicted)

mirBase accession

None

Sequence

0- GCUGGUGAAAAGGAACCACAU -21

Get sequence

Mature sequence

Xtr-Mir-133-P4-v2_3p

mirBase accession

MIMAT0003596

Sequence

38- UUGGUCCCCUUCAACCAGCCG -59

Get sequence

Proposed targets

TargetScanVert: xtr-miR-133d