MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-133-P4-v2

Family name MIR-133 (all species)
Seed UGGUCCC
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-133a-3
Paralogues Ami-Mir-133-P1-v1  Ami-Mir-133-P1-v2  Ami-Mir-133-P2-v1  Ami-Mir-133-P2-v2  Ami-Mir-133-P3-v1  Ami-Mir-133-P3-v2  Ami-Mir-133-P4-v1 
Orthologues Aae-Mir-133  Aca-Mir-133-P4-v1  Aca-Mir-133-P4-v2  Aga-Mir-133  Asu-Mir-133  Bge-Mir-133  Cbr-Mir-133  Cel-Mir-133  Cin-Mir-133  Cli-Mir-133-P4-v1  Cli-Mir-133-P4-v2  Cmi-Mir-133-P4-v1  Cmi-Mir-133-P4-v2  Cpi-Mir-133-P4-v1  Cpi-Mir-133-P4-v2  Cte-Mir-133  Dan-Mir-133  Dgr-Mir-133  Dlo-Mir-133  Dma-Mir-133  Dme-Mir-133  Dmo-Mir-133  Dpu-Mir-133  Dsi-Mir-133  Dya-Mir-133  Eba-Mir-133  Efe-Mir-133  Egr-Mir-133  Esc-Mir-133  Gga-Mir-133-P4-v1  Gga-Mir-133-P4-v2  Gja-Mir-133-P4-v1  Gja-Mir-133-P4-v2  Gpa-Mir-133  Gsp-Mir-133  Hme-Mir-133  Hru-Mir-133  Isc-Mir-133  Lan-Mir-133  Lch-Mir-133-P4  Lgi-Mir-133  Lhy-Mir-133  Llo-Mir-133  Mgi-Mir-133  Mom-Mir-133  Mun-Mir-133-P4-v1  Mun-Mir-133-P4-v2  Oan-Mir-133-P4-v1  Oan-Mir-133-P4-v2  Obi-Mir-133  Ofu-Mir-133  Ovu-Mir-133  Pau-Mir-133  Pbv-Mir-133-P4-v1  Pbv-Mir-133-P4-v2  Pca-Mir-133  Pcr-Mir-133  Pdu-Mir-133  Pma-Mir-133-o4-v1  Pma-Mir-133-o4-v2  Pve-Mir-133  Rph-Mir-133  Sma-Mir-133  Snu-Mir-133  Spt-Mir-133-P4  Spu-Mir-133  Sto-Mir-133-P4-v1  Sto-Mir-133-P4-v2  Tca-Mir-133  Tgu-Mir-133-P4-v1  Tgu-Mir-133-P4-v2  Tur-Mir-133  War-Mir-133  Xbo-Mir-133  Xla-Mir-133-P4a  Xla-Mir-133-P4b  Xtr-Mir-133-P4-v1  Xtr-Mir-133-P4-v2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017707671.1: 2163887-2163944 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-133-P4-v2)		 Mir-133-P4-v1 NW_017707671.1: 2163887-2163944 [-] UCSC
Mir-133-P4-v2 NW_017707671.1: 2163887-2163944 [-] UCSC
Mir-1-P4 NW_017707671.1: 2164097-2164159 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AGGCCCUCAGAGAAAGAGUGUGUUCCUGGGGCUGGUAAAAAGGAACCAGAUCAACUUGGAACUGGAUUUGGUCCCCUUCAACCAGCUGUAGUGGCACAUAAAUCAGCAGCCUGGGAGA
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Structure
        10          20        30        40         50        
AGGCCCUCAGAGAAAGA--|     UC   G       AAA    A-       CAACUU 
                   GUGUGU  CUG GGCUGGU   AAGG  ACCAGAU      G
                   UACACG  GAU UCGACCA   UUCC  UGGUUUA      G
AGAGGGUCCGACGACUAAA^     GU   G       AC-    CC       GGUCAA 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Ami-Mir-133-P4-v2_5p*
mirBase accessionNone
Sequence 
0- GCUGGUAAAAAGGAACCAGAU -21
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Mature sequence

Ami-Mir-133-P4-v2_3p
mirBase accessionMIMAT0038147
Sequence 
37- UUGGUCCCCUUCAACCAGCUG -58
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