Mir-133-P4-v1

MirGeneDB ID

Oan-Mir-133-P4-v1

Family name

MIR-133 (all species)

Seed

UUGGUCC

Species

Platypus (Ornithorhynchus anatinus)

MiRBase ID

oan-mir-133c

Paralogues

Oan-Mir-133-P1-v1 Oan-Mir-133-P1-v2 Oan-Mir-133-P2-v1 Oan-Mir-133-P2-v2 Oan-Mir-133-P3-v1 Oan-Mir-133-P3-v2 Oan-Mir-133-P4-v2

Orthologues

Aae-Mir-133 Aca-Mir-133-P4-v1 Aca-Mir-133-P4-v2 Aga-Mir-133 Ami-Mir-133-P4-v1 Ami-Mir-133-P4-v2 Asu-Mir-133 Bge-Mir-133 Cbr-Mir-133 Cel-Mir-133 Cin-Mir-133 Cli-Mir-133-P4-v1 Cli-Mir-133-P4-v2 Cmi-Mir-133-P4-v1 Cmi-Mir-133-P4-v2 Cpi-Mir-133-P4-v1 Cpi-Mir-133-P4-v2 Cte-Mir-133 Dan-Mir-133 Dgr-Mir-133 Dlo-Mir-133 Dma-Mir-133 Dme-Mir-133 Dmo-Mir-133 Dpu-Mir-133 Dsi-Mir-133 Dya-Mir-133 Eba-Mir-133 Efe-Mir-133 Egr-Mir-133 Esc-Mir-133 Gga-Mir-133-P4-v1 Gga-Mir-133-P4-v2 Gja-Mir-133-P4-v1 Gja-Mir-133-P4-v2 Gpa-Mir-133 Gsp-Mir-133 Hme-Mir-133 Hru-Mir-133 Isc-Mir-133 Lan-Mir-133 Lch-Mir-133-P4 Lgi-Mir-133 Lhy-Mir-133 Llo-Mir-133 Mgi-Mir-133 Mom-Mir-133 Mun-Mir-133-P4-v1 Mun-Mir-133-P4-v2 Obi-Mir-133 Ofu-Mir-133 Ovu-Mir-133 Pau-Mir-133 Pbv-Mir-133-P4-v1 Pbv-Mir-133-P4-v2 Pca-Mir-133 Pcr-Mir-133 Pdu-Mir-133 Pma-Mir-133-o4-v1 Pma-Mir-133-o4-v2 Pve-Mir-133 Rph-Mir-133 Sma-Mir-133 Snu-Mir-133 Spt-Mir-133-P4 Spu-Mir-133 Sto-Mir-133-P4-v1 Sto-Mir-133-P4-v2 Tca-Mir-133 Tgu-Mir-133-P4-v1 Tgu-Mir-133-P4-v2 Tur-Mir-133 War-Mir-133 Xbo-Mir-133 Xla-Mir-133-P4a Xla-Mir-133-P4b Xtr-Mir-133-P4-v1 Xtr-Mir-133-P4-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(mOrnAna1.p.v1_plustraces)

NC_041743.1: 39748895-39748952 [+]

Clustered miRNAs
(< 50kb from Mir-133-P4-v1)

Mir-1-P4 NC_041743.1: 39748483-39748544 [+]
Mir-133-P4-v1 NC_041743.1: 39748895-39748952 [+]
Mir-133-P4-v2 NC_041743.1: 39748895-39748952 [+]

Precursor
(pre-Mir +30nt flank)

GCCCGGCAAGCGAGUUGGCCAGCUGCUGGGGCUGGUCAAAAGGAACCAGAUCGCCUCUCCACCUGAUUUGGUCCCCUUCAACCGGCUGCAGCGGGUUGCCGGCCUCUCCCUACCUUCU

Get precursor sequence

Structure

        10          20        30        40        50        
GCCCGGCAAGCGAGUUG--| CAG      G       CA  A  A        GCCUC 
                   GC   CUGCUG GGCUGGU  AA GG ACCAGAUC     U
                   CG   GGCGAC UCGGCCA  UU CC UGGUUUAG     C
UCUUCCAUCCCUCUCCGGC^ UUG      G       AC  C  C        UCCAC 
      110       100        90        80        70        60

Deep sequencing

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3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Ce	He	Ki	Te

Star sequence

Oan-Mir-133-P4-v1_5p* (predicted)

mirBase accession

None

Sequence

0- GCUGGUCAAAAGGAACCAGAUC -22

Get sequence

Mature sequence

Oan-Mir-133-P4-v1_3p

mirBase accession

MIMAT0007150

Sequence

36- UUUGGUCCCCUUCAACCGGCUG -58

Get sequence