Mir-133-P4b

MirGeneDB ID

Xla-Mir-133-P4b

Family name

MIR-133 (all species)

Seed

UUGGUCC

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-133d

Paralogues

Xla-Mir-133-P1a-v1 Xla-Mir-133-P1a-v2 Xla-Mir-133-P1b-v1 Xla-Mir-133-P1b-v2 Xla-Mir-133-P2c-v1 Xla-Mir-133-P2c-v2 Xla-Mir-133-P2d-v1 Xla-Mir-133-P2d-v2 Xla-Mir-133-P3a-v1 Xla-Mir-133-P3a-v2 Xla-Mir-133-P3b-v1 Xla-Mir-133-P3b-v2 Xla-Mir-133-P4a

Orthologues

Aae-Mir-133 Aca-Mir-133-P4-v1 Aca-Mir-133-P4-v2 Aga-Mir-133 Ami-Mir-133-P4-v1 Ami-Mir-133-P4-v2 Asu-Mir-133 Bge-Mir-133 Cbr-Mir-133 Cel-Mir-133 Cin-Mir-133 Cli-Mir-133-P4-v1 Cli-Mir-133-P4-v2 Cmi-Mir-133-P4-v1 Cmi-Mir-133-P4-v2 Cpi-Mir-133-P4-v1 Cpi-Mir-133-P4-v2 Cte-Mir-133 Dan-Mir-133 Dgr-Mir-133 Dlo-Mir-133 Dma-Mir-133 Dme-Mir-133 Dmo-Mir-133 Dpu-Mir-133 Dsi-Mir-133 Dya-Mir-133 Eba-Mir-133 Efe-Mir-133 Egr-Mir-133 Esc-Mir-133 Gga-Mir-133-P4-v1 Gga-Mir-133-P4-v2 Gja-Mir-133-P4-v1 Gja-Mir-133-P4-v2 Gpa-Mir-133 Gsp-Mir-133 Hme-Mir-133 Hru-Mir-133 Isc-Mir-133 Lan-Mir-133 Lch-Mir-133-P4 Lgi-Mir-133 Lhy-Mir-133 Llo-Mir-133 Mgi-Mir-133 Mom-Mir-133 Mun-Mir-133-P4-v1 Mun-Mir-133-P4-v2 Oan-Mir-133-P4-v1 Oan-Mir-133-P4-v2 Obi-Mir-133 Ofu-Mir-133 Ovu-Mir-133 Pau-Mir-133 Pbv-Mir-133-P4-v1 Pbv-Mir-133-P4-v2 Pca-Mir-133 Pcr-Mir-133 Pdu-Mir-133 Pma-Mir-133-o4-v1 Pma-Mir-133-o4-v2 Pve-Mir-133 Rph-Mir-133 Sma-Mir-133 Snu-Mir-133 Spt-Mir-133-P4 Spu-Mir-133 Sto-Mir-133-P4-v1 Sto-Mir-133-P4-v2 Tca-Mir-133 Tgu-Mir-133-P4-v1 Tgu-Mir-133-P4-v2 Tur-Mir-133 War-Mir-133 Xbo-Mir-133 Xtr-Mir-133-P4-v1 Xtr-Mir-133-P4-v2

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030727.1: 66535254-66535311 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGUCAAAAAAAAAUAGGCUGUCUGGUUGCGGCUGGUGAAAAGGAACCACAUCAACCCAGCAAAAGGAUUUGGUCCCCUUCAACCAGCCGCAACUGGCCAGGAUUGCAUUAGGUAACUG

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Structure

        10         20        30         40        50         
AGUCAAAAAAAAAUAGG-   U UG           -|   AA   A   C   AACCCA 
                  CUG C  GUUGCGGCUGG UGAA  GGA CCA AUC      \
                  GAC G  CAACGCCGACC ACUU  CCU GGU UAG      G
GUCAAUGGAUUACGUUAG   C GU           A^   CC   -   U   GAAAAC 
      110       100        90        80         70        60

Deep sequencing

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3' NTU

Yes

Motifs

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Star sequence

Xla-Mir-133-P4b_5p* (predicted)

mirBase accession

None

Sequence

0- GCUGGUGAAAAGGAACCACAUC -22

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Mature sequence

Xla-Mir-133-P4b_3p

mirBase accession

MIMAT0011138

Sequence

37- UUUGGUCCCCUUCAACCAGCC -58

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