Mir-133-P4-v1

MirGeneDB ID

Pbv-Mir-133-P4-v1

Family name

MIR-133 (all species)

Seed

UUGGUCC

Species

Burmese python (Python bivittatus)

MiRBase ID

pbv-mir-133c

Paralogues

Pbv-Mir-133-P1-v1 Pbv-Mir-133-P1-v2 Pbv-Mir-133-P2-v1 Pbv-Mir-133-P2-v2 Pbv-Mir-133-P3-v1 Pbv-Mir-133-P3-v2 Pbv-Mir-133-P4-v2

Orthologues

Aae-Mir-133 Aca-Mir-133-P4-v1 Aca-Mir-133-P4-v2 Ami-Mir-133-P4-v1 Ami-Mir-133-P4-v2 Asu-Mir-133 Bge-Mir-133 Cbr-Mir-133 Cel-Mir-133 Cgi-Mir-133 Cin-Mir-133 Cli-Mir-133-P4-v1 Cli-Mir-133-P4-v2 Cmi-Mir-133-P4-v1 Cmi-Mir-133-P4-v2 Cpi-Mir-133-P4-v1 Cpi-Mir-133-P4-v2 Cte-Mir-133 Dan-Mir-133 Dma-Mir-133 Dme-Mir-133 Dmo-Mir-133 Dpu-Mir-133 Dsi-Mir-133 Dya-Mir-133 Efe-Mir-133 Esc-Mir-133 Gga-Mir-133-P4-v1 Gga-Mir-133-P4-v2 Gja-Mir-133-P4-v1 Gja-Mir-133-P4-v2 Hme-Mir-133 Isc-Mir-133 Lan-Mir-133 Lch-Mir-133-P4 Lgi-Mir-133 Mun-Mir-133-P4-v1 Mun-Mir-133-P4-v2 Oan-Mir-133-P4-v1 Oan-Mir-133-P4-v2 Obi-Mir-133 Ovu-Mir-133 Pma-Mir-133-o4-v1 Pma-Mir-133-o4-v2 Spt-Mir-133-P4 Spu-Mir-133 Sto-Mir-133-P4-v1 Sto-Mir-133-P4-v2 Tca-Mir-133 Tgu-Mir-133-P4-v1 Tgu-Mir-133-P4-v2 Xbo-Mir-133 Xla-Mir-133-P4a Xla-Mir-133-P4b Xtr-Mir-133-P4-v1 Xtr-Mir-133-P4-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_000186305.2_Python_molurus_bivittatus)

KE958846.1: 2864-2920 [+]

Clustered miRNAs
(< 50kb from Mir-133-P4-v1)

Mir-1-P4 KE958846.1: 2692-2754 [+]
Mir-133-P4-v1 KE958846.1: 2864-2920 [+]
Mir-133-P4-v2 KE958846.1: 2864-2920 [+]

Precursor
(pre-Mir +30nt flank)

AGACAGAUCUGGUUUUCUUGUGCUCCUGGGGCUGGUAAAAAGGAACCAGAUCGACUGGCAACUGAUUUGGUCCCCUUCAACCAGCUGGGGGGGCACAAACAGCUUCUGGGGCCUUCU

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Structure

        10          20        30        40         50        
AGACAGAUCUGGUUUUC--|         GG       AAA    A-        GACUG 
                   UUGUGCUCCU  GGCUGGU   AAGG  ACCAGAUC     \
                   AACACGGGGG  UCGACCA   UUCC  UGGUUUAG     G
UCUUCCGGGGUCUUCGACA^         GG       AC-    CC        UCAAC 
     110       100        90        80         70        60

Deep sequencing

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3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Pbv-Mir-133-P4-v1_5p* (predicted)

mirBase accession

None

Sequence

0- GCUGGUAAAAAGGAACCAGAUC -22

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Mature sequence

Pbv-Mir-133-P4-v1_3p

mirBase accession

MIMAT0038940

Sequence

35- UUUGGUCCCCUUCAACCAGCUG -57

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