MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-133-P4-v1

Family name MIR-133 (all species)
Seed UUGGUCC
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-133c
Paralogues Cpi-Mir-133-P1-v1  Cpi-Mir-133-P1-v2  Cpi-Mir-133-P2-v1  Cpi-Mir-133-P2-v2  Cpi-Mir-133-P3-v1  Cpi-Mir-133-P3-v2  Cpi-Mir-133-P4-v2 
Orthologues Aae-Mir-133  Aca-Mir-133-P4-v1  Aca-Mir-133-P4-v2  Ami-Mir-133-P4-v1  Ami-Mir-133-P4-v2  Asu-Mir-133  Bge-Mir-133  Cbr-Mir-133  Cel-Mir-133  Cgi-Mir-133  Cin-Mir-133  Cli-Mir-133-P4-v1  Cli-Mir-133-P4-v2  Cmi-Mir-133-P4-v1  Cmi-Mir-133-P4-v2  Cte-Mir-133  Dan-Mir-133  Dma-Mir-133  Dme-Mir-133  Dmo-Mir-133  Dpu-Mir-133  Dsi-Mir-133  Dya-Mir-133  Efe-Mir-133  Esc-Mir-133  Gga-Mir-133-P4-v1  Gga-Mir-133-P4-v2  Gja-Mir-133-P4-v1  Gja-Mir-133-P4-v2  Hme-Mir-133  Isc-Mir-133  Lan-Mir-133  Lch-Mir-133-P4  Lgi-Mir-133  Mun-Mir-133-P4-v1  Mun-Mir-133-P4-v2  Oan-Mir-133-P4-v1  Oan-Mir-133-P4-v2  Obi-Mir-133  Ovu-Mir-133  Pbv-Mir-133-P4-v1  Pbv-Mir-133-P4-v2  Pma-Mir-133-o4-v1  Pma-Mir-133-o4-v2  Spt-Mir-133-P4  Spu-Mir-133  Sto-Mir-133-P4-v1  Sto-Mir-133-P4-v2  Tca-Mir-133  Tgu-Mir-133-P4-v1  Tgu-Mir-133-P4-v2  Xbo-Mir-133  Xla-Mir-133-P4a  Xla-Mir-133-P4b  Xtr-Mir-133-P4-v1  Xtr-Mir-133-P4-v2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(chrPic1)
JH584691: 3527810-3527867 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-133-P4-v1)
Mir-1-P4 JH584691: 3527598-3527660 [+] UCSC Ensembl
Mir-133-P4-v1 JH584691: 3527810-3527867 [+] UCSC Ensembl
Mir-133-P4-v2 JH584691: 3527810-3527867 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACUGGGCCCUGGAGAGAGUGUGUCCCUGGGGCUGGUAAAAAGGAACCAGAUCAACUUGGAACUGGAUUUGGUCCCCUUCAACCAGCUGCAGUGGCGCAUACGCCAGCCUCACCAGGCG
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Structure
        10          20        30        40         50        
ACUGGGCCCUGGAGAGA--|      C   G       AAA    A-        AACUU 
                   GUGUGUC CUG GGCUGGU   AAGG  ACCAGAUC     G
                   UACGCGG GAC UCGACCA   UUCC  UGGUUUAG     G
GCGGACCACUCCGACCGCA^      U   G       AC-    CC        GUCAA 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Te Te Te To
Star sequence

Cpi-Mir-133-P4-v1_5p*

mirBase accessionNone
Sequence
0- GCUGGUAAAAAGGAACCAGAUC -22
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Mature sequence

Cpi-Mir-133-P4-v1_3p

mirBase accessionMIMAT0037753
Sequence
36- UUUGGUCCCCUUCAACCAGCUG -58
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