Mir-133-P4-v2

MirGeneDB ID

Gga-Mir-133-P4-v2

Family name

MIR-133 (all species)

Seed

UGGUCCC

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-133c

Paralogues

Gga-Mir-133-P1-v1 Gga-Mir-133-P1-v2 Gga-Mir-133-P2-v1 Gga-Mir-133-P2-v2 Gga-Mir-133-P3-v1 Gga-Mir-133-P3-v2 Gga-Mir-133-P4-v1

Orthologues

Aae-Mir-133 Aca-Mir-133-P4-v1 Aca-Mir-133-P4-v2 Aga-Mir-133 Ami-Mir-133-P4-v1 Ami-Mir-133-P4-v2 Asu-Mir-133 Bge-Mir-133 Cbr-Mir-133 Cel-Mir-133 Cin-Mir-133 Cli-Mir-133-P4-v1 Cli-Mir-133-P4-v2 Cmi-Mir-133-P4-v1 Cmi-Mir-133-P4-v2 Cpi-Mir-133-P4-v1 Cpi-Mir-133-P4-v2 Cte-Mir-133 Dan-Mir-133 Dgr-Mir-133 Dlo-Mir-133 Dma-Mir-133 Dme-Mir-133 Dmo-Mir-133 Dpu-Mir-133 Dsi-Mir-133 Dya-Mir-133 Eba-Mir-133 Efe-Mir-133 Egr-Mir-133 Esc-Mir-133 Gja-Mir-133-P4-v1 Gja-Mir-133-P4-v2 Gpa-Mir-133 Gsp-Mir-133 Hme-Mir-133 Hru-Mir-133 Isc-Mir-133 Lan-Mir-133 Lch-Mir-133-P4 Lgi-Mir-133 Lhy-Mir-133 Llo-Mir-133 Mgi-Mir-133 Mom-Mir-133 Mun-Mir-133-P4-v1 Mun-Mir-133-P4-v2 Oan-Mir-133-P4-v1 Oan-Mir-133-P4-v2 Obi-Mir-133 Ofu-Mir-133 Ovu-Mir-133 Pau-Mir-133 Pbv-Mir-133-P4-v1 Pbv-Mir-133-P4-v2 Pca-Mir-133 Pcr-Mir-133 Pdu-Mir-133 Pma-Mir-133-o4-v1 Pma-Mir-133-o4-v2 Pve-Mir-133 Rph-Mir-133 Sma-Mir-133 Snu-Mir-133 Spt-Mir-133-P4 Spu-Mir-133 Sto-Mir-133-P4-v1 Sto-Mir-133-P4-v2 Tca-Mir-133 Tgu-Mir-133-P4-v1 Tgu-Mir-133-P4-v2 Tur-Mir-133 War-Mir-133 Xbo-Mir-133 Xla-Mir-133-P4a Xla-Mir-133-P4b Xtr-Mir-133-P4-v1 Xtr-Mir-133-P4-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

23: 4489890-4489946 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-133-P4-v2)

Mir-1-P4 23: 4489739-4489801 [+] UCSC Ensembl
Mir-133-P4-v1 23: 4489890-4489946 [+] UCSC Ensembl
Mir-133-P4-v2 23: 4489890-4489946 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAUGGAACGAAGGAGUGGUGCCUUCCUGGGGCUGGUAAAAAGGAACCAGAUCAACUACAACUGGAUUUGGUCCCCUUCAACCAGCUGCAGUGGGGCACGAGGUGACACGAGAUGACA

Get precursor sequence

Structure

        10          20        30        40         50        
CAUGGAACGAAGGAGUG--|     UC   G       AAA    A-       CAACUA 
                   GUGCCU  CUG GGCUGGU   AAGG  ACCAGAU      \
                   CACGGG  GAC UCGACCA   UUCC  UGGUUUA      C
ACAGUAGAGCACAGUGGAG^     GU   G       AC-    CC       GGUCAA 
     110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-133-P4-v2_5p*

mirBase accession

MIMAT0026537

Sequence

0- GCUGGUAAAAAGGAACCAGAU -21

Get sequence

Proposed targets

TargetScanVert: gga-miR-133c-5p
miRDB: MIMAT0026537

Mature sequence

Gga-Mir-133-P4-v2_3p

mirBase accession

MIMAT0001176

Sequence

36- UUGGUCCCCUUCAACCAGCUG -57

Get sequence

Proposed targets

TargetScanVert: gga-miR-133c-3p
miRDB: MIMAT0001176