MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-133-P2-v2

Family name MIR-133 (all species)
Seed UGGUCCC
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-133b
Paralogues Cpi-Mir-133-P1-v1  Cpi-Mir-133-P1-v2  Cpi-Mir-133-P2-v1  Cpi-Mir-133-P3-v1  Cpi-Mir-133-P3-v2  Cpi-Mir-133-P4-v1  Cpi-Mir-133-P4-v2 
Orthologues Aae-Mir-133  Aca-Mir-133-P2-v1  Aca-Mir-133-P2-v2  Ami-Mir-133-P2-v1  Ami-Mir-133-P2-v2  Asu-Mir-133  Bge-Mir-133  Bta-Mir-133-P2-v1  Bta-Mir-133-P2-v2  Cbr-Mir-133  Cel-Mir-133  Cfa-Mir-133-P2-v1  Cfa-Mir-133-P2-v2  Cgi-Mir-133  Cin-Mir-133  Cli-Mir-133-P2-v1  Cli-Mir-133-P2-v2  Cpo-Mir-133-P2-v1  Cpo-Mir-133-P2-v2  Cte-Mir-133  Dan-Mir-133  Dma-Mir-133  Dme-Mir-133  Dmo-Mir-133  Dno-Mir-133-P2-v1  Dno-Mir-133-P2-v2  Dpu-Mir-133  Dre-Mir-133-P2a-v1  Dre-Mir-133-P2a-v2  Dre-Mir-133-P2b-v1  Dre-Mir-133-P2b-v2  Dsi-Mir-133  Dya-Mir-133  Efe-Mir-133  Esc-Mir-133  Ete-Mir-133-P2-v1  Ete-Mir-133-P2-v2  Gga-Mir-133-P2-v1  Gga-Mir-133-P2-v2  Gja-Mir-133-P2-v1  Gja-Mir-133-P2-v2  Gmo-Mir-133-P2a-v1  Gmo-Mir-133-P2a-v2  Hme-Mir-133  Hsa-Mir-133-P2-v1  Hsa-Mir-133-P2-v2  Isc-Mir-133  Lan-Mir-133  Lch-Mir-133-P2  Lgi-Mir-133  Loc-Mir-133-P2-v1  Loc-Mir-133-P2-v2  Mal-Mir-133-P2a-v1  Mal-Mir-133-P2a-v2  Mdo-Mir-133-P2-v1  Mdo-Mir-133-P2-v2  Mml-Mir-133-P2-v1  Mml-Mir-133-P2-v2  Mmu-Mir-133-P2-v1  Mmu-Mir-133-P2-v2  Mun-Mir-133-P2-v1  Mun-Mir-133-P2-v2  Oan-Mir-133-P2-v1  Oan-Mir-133-P2-v2  Obi-Mir-133  Ocu-Mir-133-P2-v1  Ocu-Mir-133-P2-v2  Ovu-Mir-133  Pbv-Mir-133-P2-v1  Pbv-Mir-133-P2-v2  Pma-Mir-133-o2-v1  Pma-Mir-133-o2-v2  Rno-Mir-133-P2-v1  Rno-Mir-133-P2-v2  Sha-Mir-133-P2-v1  Sha-Mir-133-P2-v2  Spt-Mir-133-P2  Spu-Mir-133  Tca-Mir-133  Tgu-Mir-133-P2-v1  Tgu-Mir-133-P2-v2  Tni-Mir-133-P2a-v1  Tni-Mir-133-P2a-v2  Xbo-Mir-133  Xla-Mir-133-P2c-v1  Xla-Mir-133-P2c-v2  Xla-Mir-133-P2d-v1  Xla-Mir-133-P2d-v2  Xtr-Mir-133-P2-v1  Xtr-Mir-133-P2-v2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(chrPic1)
JH584857: 801505-801563 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-133-P2-v2)
Mir-133-P2-v1 JH584857: 801505-801563 [-] UCSC Ensembl
Mir-133-P2-v2 JH584857: 801505-801563 [-] UCSC Ensembl
Mir-1-P2 JH584857: 808079-808138 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAUGGAUACAGGGGCUGCACCCUGCUCUGGCUGGUCAAACGGAACCAAGUCCGUCUUCCUUGGAGGUUUGGUCCCCUUCAACCAGCUACAGCAGUGCUGAAAUCGUCCGGCCGUUGGA
Get precursor sequence
Structure
        10            20        30        40        50         
ACAUGGAUACAGGGGCU----|   CC    C        CA  C  A       CCGUCUU 
                     GCAC  UGCU UGGCUGGU  AA GG ACCAAGU       \
                     CGUG  ACGA AUCGACCA  UU CC UGGUUUG       C
AGGUUGCCGGCCUGCUAAAGU^   --    C        AC  C  C       GAGGUUC 
       110       100          90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Te Te Te To
Star sequence

Cpi-Mir-133-P2-v2_5p* (predicted)

mirBase accessionNone
Sequence
0- GCUGGUCAAACGGAACCAAGU -21
Get sequence
Mature sequence

Cpi-Mir-133-P2-v2_3p

mirBase accessionMIMAT0037752
Sequence
38- UUGGUCCCCUUCAACCAGCUA -59
Get sequence