Mir-133-P2b-v1

MirGeneDB ID

Dre-Mir-133-P2b-v1

Family name

MIR-133 (all species)

Seed

UUGGUCC

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-133c

Paralogues

Dre-Mir-133-P1-v1 Dre-Mir-133-P1-v2 Dre-Mir-133-P2a-v1 Dre-Mir-133-P2a-v2 Dre-Mir-133-P2b-v2 Dre-Mir-133-P3-v1 Dre-Mir-133-P3-v2

Orthologues

Aae-Mir-133 Aca-Mir-133-P2-v1 Aca-Mir-133-P2-v2 Aga-Mir-133 Ami-Mir-133-P2-v1 Ami-Mir-133-P2-v2 Asu-Mir-133 Bge-Mir-133 Bta-Mir-133-P2-v1 Bta-Mir-133-P2-v2 Cbr-Mir-133 Cel-Mir-133 Cfa-Mir-133-P2-v1 Cfa-Mir-133-P2-v2 Cin-Mir-133 Cja-Mir-133-P2 Cli-Mir-133-P2-v1 Cli-Mir-133-P2-v2 Cpi-Mir-133-P2-v1 Cpi-Mir-133-P2-v2 Cpo-Mir-133-P2-v1 Cpo-Mir-133-P2-v2 Cte-Mir-133 Dan-Mir-133 Dgr-Mir-133 Dlo-Mir-133 Dma-Mir-133 Dme-Mir-133 Dmo-Mir-133 Dno-Mir-133-P2-v1 Dno-Mir-133-P2-v2 Dpu-Mir-133 Dsi-Mir-133 Dya-Mir-133 Eba-Mir-133 Eca-Mir-133-P2-v1 Eca-Mir-133-P2-v2 Efe-Mir-133 Egr-Mir-133 Esc-Mir-133 Ete-Mir-133-P2-v1 Ete-Mir-133-P2-v2 Gga-Mir-133-P2-v1 Gga-Mir-133-P2-v2 Gja-Mir-133-P2-v1 Gja-Mir-133-P2-v2 Gpa-Mir-133 Gsp-Mir-133 Hme-Mir-133 Hru-Mir-133 Hsa-Mir-133-P2-v1 Hsa-Mir-133-P2-v2 Isc-Mir-133 Laf-Mir-133-P2 Lan-Mir-133 Lch-Mir-133-P2 Lgi-Mir-133 Lhy-Mir-133 Llo-Mir-133 Loc-Mir-133-P2-v1 Loc-Mir-133-P2-v2 Mdo-Mir-133-P2-v1 Mdo-Mir-133-P2-v2 Mgi-Mir-133 Mml-Mir-133-P2-v1 Mml-Mir-133-P2-v2 Mmr-Mir-133-P2-v1 Mmr-Mir-133-P2-v2 Mmu-Mir-133-P2-v1 Mmu-Mir-133-P2-v2 Mom-Mir-133 Mun-Mir-133-P2-v1 Mun-Mir-133-P2-v2 Oan-Mir-133-P2-v1 Oan-Mir-133-P2-v2 Obi-Mir-133 Ocu-Mir-133-P2-v1 Ocu-Mir-133-P2-v2 Ofu-Mir-133 Ovu-Mir-133 Pab-Mir-133-P2 Pau-Mir-133 Pbv-Mir-133-P2-v1 Pbv-Mir-133-P2-v2 Pca-Mir-133 Pcr-Mir-133 Pdu-Mir-133 Pma-Mir-133-o2-v1 Pma-Mir-133-o2-v2 Pve-Mir-133 Rno-Mir-133-P2-v1 Rno-Mir-133-P2-v2 Rph-Mir-133 Sha-Mir-133-P2-v1 Sha-Mir-133-P2-v2 Sma-Mir-133 Snu-Mir-133 Spt-Mir-133-P2 Spu-Mir-133 Tca-Mir-133 Tgu-Mir-133-P2-v1 Tgu-Mir-133-P2-v2 Tur-Mir-133 War-Mir-133 Xbo-Mir-133 Xtr-Mir-133-P2-v1 Xtr-Mir-133-P2-v2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(danRer11)

chr17: 5962990-5963049 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-133-P2b-v1)

Mir-133-P2b-v1 chr17: 5962990-5963049 [-] UCSC Ensembl
Mir-133-P2b-v2 chr17: 5962990-5963049 [-] UCSC Ensembl
Mir-1-P2b chr17: 5967262-5967321 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCGUCAGUCUUCAGAAACACGGCUUAGUUGCUGGUAAAACGGAACCAAGUCGGGUGUUUGCGAGAGGUUUGGUCCCUUUCAACCAGCUACUGCGCCGUGAAUUCAGCCUGCAACACUGA

Get precursor sequence

Structure

        10          20        30        40        50         
CUCGUCAGUCUUCAGAAA--|     U    U      AA  C  A     GU GGGUGU 
                    CACGGC UAGU GCUGGU  AA GG ACCAA  C      U
                    GUGCCG GUCA CGACCA  UU CC UGGUU  G      U
AGUCACAACGUCCGACUUAA^     C    U      AC  U  C     UG AGAGCG 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Star sequence

Dre-Mir-133-P2b-v1_5p*

mirBase accession

MIMAT0031971

Sequence

0- GCUGGUAAAACGGAACCAAGUC -22

Get sequence

Mature sequence

Dre-Mir-133-P2b-v1_3p

mirBase accession

MIMAT0001832

Sequence

38- UUUGGUCCCUUUCAACCAGCUA -60

Get sequence

Proposed targets

TargetScanFish: dre-miR-133c