Mir-133-P2-v1

MirGeneDB ID

Cpo-Mir-133-P2-v1

Family name

MIR-133 (all species)

Seed

UUGGUCC

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-133b

Paralogues

Cpo-Mir-133-P1-v1 Cpo-Mir-133-P1-v2 Cpo-Mir-133-P2-v2 Cpo-Mir-133-P3-v1 Cpo-Mir-133-P3-v2

Orthologues

Aae-Mir-133 Aca-Mir-133-P2-v1 Aca-Mir-133-P2-v2 Aga-Mir-133 Ami-Mir-133-P2-v1 Ami-Mir-133-P2-v2 Asu-Mir-133 Bge-Mir-133 Bta-Mir-133-P2-v1 Bta-Mir-133-P2-v2 Cbr-Mir-133 Cel-Mir-133 Cfa-Mir-133-P2-v1 Cfa-Mir-133-P2-v2 Cin-Mir-133 Cja-Mir-133-P2 Cli-Mir-133-P2-v1 Cli-Mir-133-P2-v2 Cpi-Mir-133-P2-v1 Cpi-Mir-133-P2-v2 Cte-Mir-133 Dan-Mir-133 Dgr-Mir-133 Dlo-Mir-133 Dma-Mir-133 Dme-Mir-133 Dmo-Mir-133 Dno-Mir-133-P2-v1 Dno-Mir-133-P2-v2 Dpu-Mir-133 Dre-Mir-133-P2a-v1 Dre-Mir-133-P2a-v2 Dre-Mir-133-P2b-v1 Dre-Mir-133-P2b-v2 Dsi-Mir-133 Dya-Mir-133 Eba-Mir-133 Eca-Mir-133-P2-v1 Eca-Mir-133-P2-v2 Efe-Mir-133 Egr-Mir-133 Esc-Mir-133 Ete-Mir-133-P2-v1 Ete-Mir-133-P2-v2 Gga-Mir-133-P2-v1 Gga-Mir-133-P2-v2 Gja-Mir-133-P2-v1 Gja-Mir-133-P2-v2 Gmo-Mir-133-P2a-v1 Gmo-Mir-133-P2a-v2 Gpa-Mir-133 Gsp-Mir-133 Hme-Mir-133 Hru-Mir-133 Hsa-Mir-133-P2-v1 Hsa-Mir-133-P2-v2 Isc-Mir-133 Laf-Mir-133-P2 Lan-Mir-133 Lch-Mir-133-P2 Lgi-Mir-133 Lhy-Mir-133 Llo-Mir-133 Loc-Mir-133-P2-v1 Loc-Mir-133-P2-v2 Mal-Mir-133-P2a-v1 Mal-Mir-133-P2a-v2 Mdo-Mir-133-P2-v1 Mdo-Mir-133-P2-v2 Mgi-Mir-133 Mml-Mir-133-P2-v1 Mml-Mir-133-P2-v2 Mmr-Mir-133-P2-v1 Mmr-Mir-133-P2-v2 Mmu-Mir-133-P2-v1 Mmu-Mir-133-P2-v2 Mom-Mir-133 Mun-Mir-133-P2-v1 Mun-Mir-133-P2-v2 Oan-Mir-133-P2-v1 Oan-Mir-133-P2-v2 Obi-Mir-133 Ocu-Mir-133-P2-v1 Ocu-Mir-133-P2-v2 Ofu-Mir-133 Ovu-Mir-133 Pab-Mir-133-P2 Pau-Mir-133 Pbv-Mir-133-P2-v1 Pbv-Mir-133-P2-v2 Pca-Mir-133 Pcr-Mir-133 Pdu-Mir-133 Pma-Mir-133-o2-v1 Pma-Mir-133-o2-v2 Pve-Mir-133 Rno-Mir-133-P2-v1 Rno-Mir-133-P2-v2 Rph-Mir-133 Sha-Mir-133-P2-v1 Sha-Mir-133-P2-v2 Sma-Mir-133 Snu-Mir-133 Spt-Mir-133-P2 Spu-Mir-133 Tca-Mir-133 Tgu-Mir-133-P2-v1 Tgu-Mir-133-P2-v2 Tni-Mir-133-P2a-v1 Tni-Mir-133-P2a-v2 Tur-Mir-133 War-Mir-133 Xbo-Mir-133 Xla-Mir-133-P2c-v1 Xla-Mir-133-P2c-v2 Xla-Mir-133-P2d-v1 Xla-Mir-133-P2d-v2 Xtr-Mir-133-P2-v1 Xtr-Mir-133-P2-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(cavPor3)

scaffold_12: 49862235-49862293 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-133-P2-v1)

Mir-1-P2 scaffold_12: 49857882-49857941 [+] UCSC
Mir-133-P2-v1 scaffold_12: 49862235-49862293 [+] UCSC
Mir-133-P2-v2 scaffold_12: 49862235-49862293 [+] UCSC

Precursor
(pre-Mir +30nt flank)

CACCUCAUGAGGGAGCUGCCCCUUGCUCUGGCUGGUCAAACGGAACCAAGUCCGUCUUCCUGAGAGGUUUGGUCCCCUUCAACCAGCUACAGCAGGGCUGGCAAUGCCCAGUUCUUGGA

Get precursor sequence

Structure

        10            20        30        40        50         
CACCUCAUGAGGGAGCU----|   CU    C        CA  C  A     GU CGUCUU 
                     GCCC  UGCU UGGCUGGU  AA GG ACCAA  C      \
                     CGGG  ACGA AUCGACCA  UU CC UGGUU  G      C
AGGUUCUUGACCCGUAACGGU^   --    C        AC  C  C     UG AGAGUC 
       110       100          90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Bl	Bl	Bl	Bl	Oo	Oo	Oo	Oo	To	Wh

Star sequence

Cpo-Mir-133-P2-v1_5p*

mirBase accession

MIMAT0046988

Sequence

0- GCUGGUCAAACGGAACCAAGUC -22

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Mature sequence

Cpo-Mir-133-P2-v1_3p

mirBase accession

MIMAT0046989

Sequence

37- UUUGGUCCCCUUCAACCAGCUA -59

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