Mir-133-P2d-v2

MirGeneDB ID

Xla-Mir-133-P2d-v2

Family name

MIR-133 (all species)

Seed

UGGUCCC

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-133b

Paralogues

Xla-Mir-133-P1a-v1 Xla-Mir-133-P1a-v2 Xla-Mir-133-P1b-v1 Xla-Mir-133-P1b-v2 Xla-Mir-133-P2c-v1 Xla-Mir-133-P2c-v2 Xla-Mir-133-P2d-v1 Xla-Mir-133-P3a-v1 Xla-Mir-133-P3a-v2 Xla-Mir-133-P3b-v1 Xla-Mir-133-P3b-v2 Xla-Mir-133-P4a Xla-Mir-133-P4b

Orthologues

Aae-Mir-133 Aca-Mir-133-P2-v1 Aca-Mir-133-P2-v2 Aga-Mir-133 Ami-Mir-133-P2-v1 Ami-Mir-133-P2-v2 Asu-Mir-133 Bge-Mir-133 Bta-Mir-133-P2-v1 Bta-Mir-133-P2-v2 Cbr-Mir-133 Cel-Mir-133 Cfa-Mir-133-P2-v1 Cfa-Mir-133-P2-v2 Cin-Mir-133 Cja-Mir-133-P2 Cli-Mir-133-P2-v1 Cli-Mir-133-P2-v2 Cpi-Mir-133-P2-v1 Cpi-Mir-133-P2-v2 Cpo-Mir-133-P2-v1 Cpo-Mir-133-P2-v2 Cte-Mir-133 Dan-Mir-133 Dgr-Mir-133 Dlo-Mir-133 Dma-Mir-133 Dme-Mir-133 Dmo-Mir-133 Dno-Mir-133-P2-v1 Dno-Mir-133-P2-v2 Dpu-Mir-133 Dsi-Mir-133 Dya-Mir-133 Eba-Mir-133 Eca-Mir-133-P2-v1 Eca-Mir-133-P2-v2 Efe-Mir-133 Egr-Mir-133 Esc-Mir-133 Ete-Mir-133-P2-v1 Ete-Mir-133-P2-v2 Gga-Mir-133-P2-v1 Gga-Mir-133-P2-v2 Gja-Mir-133-P2-v1 Gja-Mir-133-P2-v2 Gpa-Mir-133 Gsp-Mir-133 Hme-Mir-133 Hru-Mir-133 Hsa-Mir-133-P2-v1 Hsa-Mir-133-P2-v2 Isc-Mir-133 Laf-Mir-133-P2 Lan-Mir-133 Lch-Mir-133-P2 Lgi-Mir-133 Lhy-Mir-133 Llo-Mir-133 Loc-Mir-133-P2-v1 Loc-Mir-133-P2-v2 Mdo-Mir-133-P2-v1 Mdo-Mir-133-P2-v2 Mgi-Mir-133 Mml-Mir-133-P2-v1 Mml-Mir-133-P2-v2 Mmr-Mir-133-P2-v1 Mmr-Mir-133-P2-v2 Mmu-Mir-133-P2-v1 Mmu-Mir-133-P2-v2 Mom-Mir-133 Mun-Mir-133-P2-v1 Mun-Mir-133-P2-v2 Oan-Mir-133-P2-v1 Oan-Mir-133-P2-v2 Obi-Mir-133 Ocu-Mir-133-P2-v1 Ocu-Mir-133-P2-v2 Ofu-Mir-133 Ovu-Mir-133 Pab-Mir-133-P2 Pau-Mir-133 Pbv-Mir-133-P2-v1 Pbv-Mir-133-P2-v2 Pca-Mir-133 Pcr-Mir-133 Pdu-Mir-133 Pma-Mir-133-o2-v1 Pma-Mir-133-o2-v2 Pve-Mir-133 Rno-Mir-133-P2-v1 Rno-Mir-133-P2-v2 Rph-Mir-133 Sha-Mir-133-P2-v1 Sha-Mir-133-P2-v2 Sma-Mir-133 Snu-Mir-133 Spt-Mir-133-P2 Spu-Mir-133 Tca-Mir-133 Tgu-Mir-133-P2-v1 Tgu-Mir-133-P2-v2 Tur-Mir-133 War-Mir-133 Xbo-Mir-133 Xtr-Mir-133-P2-v1 Xtr-Mir-133-P2-v2

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030733.1: 130020489-130020547 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-133-P2d-v2)

Mir-133-P2d-v1 NC_030733.1: 130020489-130020547 [+] UCSC Ensembl
Mir-133-P2d-v2 NC_030733.1: 130020489-130020547 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUAUGUCUCAGGGCCUUACAGGCUGCUAUGGCUGGUCAAACGGAACCAAGUCCGUCUUCCUUAGAGGUUUGGUCCCCUUCAACCAGCUAUUGCAGUACUGAGCCUCAACAGCCCCAAGC

Get precursor sequence

Structure

        10         20         30        40        50         
GUAUGUCUCAGGGCCUUA-   -|    U         CA  C  A       CCGUCUU 
                   CAG GCUGC AUGGCUGGU  AA GG ACCAAGU       \
                   GUC UGACG UAUCGACCA  UU CC UGGUUUG       C
CGAACCCCGACAACUCCGA   A^    U         AC  C  C       GAGAUUC 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Star sequence

Xla-Mir-133-P2d-v2_5p*

mirBase accession

None

Sequence

0- GCUGGUCAAACGGAACCAAGU -21

Get sequence

Mature sequence

Xla-Mir-133-P2d-v2_3p

mirBase accession

MIMAT0011137

Sequence

38- UUGGUCCCCUUCAACCAGCUA -59

Get sequence