Mir-133-P3-v2

MirGeneDB ID

Xtr-Mir-133-P3-v2

Family name

MIR-133 (all species)

Seed

UGGUCCC

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-133c

Paralogues

Xtr-Mir-133-P1-v1 Xtr-Mir-133-P1-v2 Xtr-Mir-133-P2-v1 Xtr-Mir-133-P2-v2 Xtr-Mir-133-P3-v1 Xtr-Mir-133-P4-v1 Xtr-Mir-133-P4-v2

Orthologues

Aae-Mir-133 Aca-Mir-133-P3-v1 Aca-Mir-133-P3-v2 Aga-Mir-133 Ami-Mir-133-P3-v1 Ami-Mir-133-P3-v2 Asu-Mir-133 Bge-Mir-133 Bta-Mir-133-P3-v1 Bta-Mir-133-P3-v2 Cbr-Mir-133 Cel-Mir-133 Cfa-Mir-133-P3-v1 Cfa-Mir-133-P3-v2 Cin-Mir-133 Cja-Mir-133-P3 Cli-Mir-133-P3-v1 Cli-Mir-133-P3-v2 Cmi-Mir-133-P3-v1 Cmi-Mir-133-P3-v2 Cpi-Mir-133-P3-v1 Cpi-Mir-133-P3-v2 Cpo-Mir-133-P3-v1 Cpo-Mir-133-P3-v2 Cte-Mir-133 Dan-Mir-133 Dgr-Mir-133 Dlo-Mir-133 Dma-Mir-133 Dme-Mir-133 Dmo-Mir-133 Dno-Mir-133-P3-v1 Dno-Mir-133-P3-v2 Dpu-Mir-133 Dre-Mir-133-P3-v1 Dre-Mir-133-P3-v2 Dsi-Mir-133 Dya-Mir-133 Eba-Mir-133 Eca-Mir-133-P3-v1 Eca-Mir-133-P3-v2 Efe-Mir-133 Egr-Mir-133 Esc-Mir-133 Ete-Mir-133-P3-v1 Ete-Mir-133-P3-v2 Gga-Mir-133-P3-v1 Gga-Mir-133-P3-v2 Gja-Mir-133-P3-v1 Gja-Mir-133-P3-v2 Gmo-Mir-133-P3-v1 Gmo-Mir-133-P3-v2 Gpa-Mir-133 Gsp-Mir-133 Hme-Mir-133 Hru-Mir-133 Hsa-Mir-133-P3-v1 Hsa-Mir-133-P3-v2 Isc-Mir-133 Laf-Mir-133-P3-v1 Laf-Mir-133-P3-v2 Lan-Mir-133 Lch-Mir-133-P3 Lgi-Mir-133 Lhy-Mir-133 Llo-Mir-133 Loc-Mir-133-P3-v1 Loc-Mir-133-P3-v2 Mal-Mir-133-P3-v1 Mal-Mir-133-P3-v2 Mdo-Mir-133-P3-v1 Mdo-Mir-133-P3-v2 Mgi-Mir-133 Mml-Mir-133-P3-v1 Mml-Mir-133-P3-v2 Mmr-Mir-133-P3-v1 Mmr-Mir-133-P3-v2 Mmu-Mir-133-P3-v1 Mmu-Mir-133-P3-v2 Mom-Mir-133 Mun-Mir-133-P3-v1 Mun-Mir-133-P3-v2 Neu-Mir-133-P3-v1 Neu-Mir-133-P3-v2 Oan-Mir-133-P3-v1 Oan-Mir-133-P3-v2 Obi-Mir-133 Ofu-Mir-133 Ovu-Mir-133 Pab-Mir-133-P3 Pau-Mir-133 Pbv-Mir-133-P3-v1 Pbv-Mir-133-P3-v2 Pca-Mir-133 Pcr-Mir-133 Pdu-Mir-133 Pma-Mir-133-o3-v1 Pma-Mir-133-o3-v2 Pve-Mir-133 Rno-Mir-133-P3-v1 Rno-Mir-133-P3-v2 Rph-Mir-133 Sha-Mir-133-P3-v1 Sha-Mir-133-P3-v2 Sma-Mir-133 Snu-Mir-133 Spt-Mir-133-P3 Spu-Mir-133 Sto-Mir-133-P3-v1 Sto-Mir-133-P3-v2 Tca-Mir-133 Tgu-Mir-133-P3-v1 Tgu-Mir-133-P3-v2 Tur-Mir-133 War-Mir-133 Xbo-Mir-133 Xla-Mir-133-P3a-v1 Xla-Mir-133-P3a-v2 Xla-Mir-133-P3b-v1 Xla-Mir-133-P3b-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(xenTro9_add)

chrUn_NW_016683679v1: 81400-81459 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-133-P3-v2)

Mir-133-P3-v1 chrUn_NW_016683679v1: 81400-81459 [-] UCSC Ensembl
Mir-133-P3-v2 chrUn_NW_016683679v1: 81400-81459 [-] UCSC Ensembl
Mir-1-P3 chrUn_NW_016683679v1: 104671-104732 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GACUCCACCCAAGGUUGAAUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCAACUGUUGAAUGGAUUUGGUCCCCUUCAACCAGCUGCAGCUGUGCAUUGAUCGCUCUGACGCCGCUG

Get precursor sequence

Structure

        10          20        30        40        50         
GACUCCACCCAAGGUUG--|    UUU   AA       AA  U  A       CAACUG 
                   AAUGC   GCU  AGCUGGU  AA GG ACCAAAU      U
                   UUACG   CGA  UCGACCA  UU CC UGGUUUA      U
GUCGCCGCAGUCUCGCUAG^    UGU   CG       AC  C  C       GGUAAG 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Yes

Motifs

Tissue expression

An	Br	Em	Em	He	Ve

Star sequence

Xtr-Mir-133-P3-v2_5p*

mirBase accession

None

Sequence

0- AGCUGGUAAAAUGGAACCAAAU -22

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Mature sequence

Xtr-Mir-133-P3-v2_3p

mirBase accession

MIMAT0003595

Sequence

38- UUGGUCCCCUUCAACCAGCUGC -60

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Proposed targets

TargetScanVert: xtr-miR-133c