Mir-133-P3-v1

MirGeneDB ID

Gmo-Mir-133-P3-v1

Family name

MIR-133 (all species)

Seed

UUGGUCC

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-133a-2

Paralogues

Gmo-Mir-133-P1-v1 Gmo-Mir-133-P1-v2 Gmo-Mir-133-P2a-v1 Gmo-Mir-133-P2a-v2 Gmo-Mir-133-P3-v2

Orthologues

Aae-Mir-133 Aca-Mir-133-P3-v1 Aca-Mir-133-P3-v2 Aga-Mir-133 Ami-Mir-133-P3-v1 Ami-Mir-133-P3-v2 Asu-Mir-133 Bge-Mir-133 Bta-Mir-133-P3-v1 Bta-Mir-133-P3-v2 Cbr-Mir-133 Cel-Mir-133 Cfa-Mir-133-P3-v1 Cfa-Mir-133-P3-v2 Cin-Mir-133 Cja-Mir-133-P3 Cli-Mir-133-P3-v1 Cli-Mir-133-P3-v2 Cmi-Mir-133-P3-v1 Cmi-Mir-133-P3-v2 Cpi-Mir-133-P3-v1 Cpi-Mir-133-P3-v2 Cpo-Mir-133-P3-v1 Cpo-Mir-133-P3-v2 Cte-Mir-133 Dan-Mir-133 Dgr-Mir-133 Dlo-Mir-133 Dma-Mir-133 Dme-Mir-133 Dmo-Mir-133 Dno-Mir-133-P3-v1 Dno-Mir-133-P3-v2 Dpu-Mir-133 Dre-Mir-133-P3-v1 Dre-Mir-133-P3-v2 Dsi-Mir-133 Dya-Mir-133 Eba-Mir-133 Eca-Mir-133-P3-v1 Eca-Mir-133-P3-v2 Efe-Mir-133 Egr-Mir-133 Esc-Mir-133 Ete-Mir-133-P3-v1 Ete-Mir-133-P3-v2 Gga-Mir-133-P3-v1 Gga-Mir-133-P3-v2 Gja-Mir-133-P3-v1 Gja-Mir-133-P3-v2 Gpa-Mir-133 Gsp-Mir-133 Hme-Mir-133 Hru-Mir-133 Hsa-Mir-133-P3-v1 Hsa-Mir-133-P3-v2 Isc-Mir-133 Laf-Mir-133-P3-v1 Laf-Mir-133-P3-v2 Lan-Mir-133 Lch-Mir-133-P3 Lgi-Mir-133 Lhy-Mir-133 Llo-Mir-133 Loc-Mir-133-P3-v1 Loc-Mir-133-P3-v2 Mal-Mir-133-P3-v1 Mal-Mir-133-P3-v2 Mdo-Mir-133-P3-v1 Mdo-Mir-133-P3-v2 Mgi-Mir-133 Mml-Mir-133-P3-v1 Mml-Mir-133-P3-v2 Mmr-Mir-133-P3-v1 Mmr-Mir-133-P3-v2 Mmu-Mir-133-P3-v1 Mmu-Mir-133-P3-v2 Mom-Mir-133 Mun-Mir-133-P3-v1 Mun-Mir-133-P3-v2 Neu-Mir-133-P3-v1 Neu-Mir-133-P3-v2 Oan-Mir-133-P3-v1 Oan-Mir-133-P3-v2 Obi-Mir-133 Ofu-Mir-133 Ovu-Mir-133 Pab-Mir-133-P3 Pau-Mir-133 Pbv-Mir-133-P3-v1 Pbv-Mir-133-P3-v2 Pca-Mir-133 Pcr-Mir-133 Pdu-Mir-133 Pma-Mir-133-o3-v1 Pma-Mir-133-o3-v2 Pve-Mir-133 Rno-Mir-133-P3-v1 Rno-Mir-133-P3-v2 Rph-Mir-133 Sha-Mir-133-P3-v1 Sha-Mir-133-P3-v2 Sma-Mir-133 Snu-Mir-133 Spt-Mir-133-P3 Spu-Mir-133 Sto-Mir-133-P3-v1 Sto-Mir-133-P3-v2 Tca-Mir-133 Tgu-Mir-133-P3-v1 Tgu-Mir-133-P3-v2 Tur-Mir-133 War-Mir-133 Xbo-Mir-133 Xla-Mir-133-P3a-v1 Xla-Mir-133-P3a-v2 Xla-Mir-133-P3b-v1 Xla-Mir-133-P3b-v2 Xtr-Mir-133-P3-v1 Xtr-Mir-133-P3-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_1003: 79094-79153 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-133-P3-v1)

Mir-133-P3-v1 GeneScaffold_1003: 79094-79153 [-] UCSC Ensembl
Mir-133-P3-v2 GeneScaffold_1003: 79094-79153 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCAACAUCCCAGCCAAAAAUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCAACUGUUAAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGCUGUGCAUUGAUCACAGCCAAACUGACA

Get precursor sequence

Structure

        10          20        30        40        50         
CCAACAUCCCAGCCAAA--|    UUU    A       AA  U  A        AACUG 
                   AAUGC   GCUA AGCUGGU  AA GG ACCAAAUC     U
                   UUACG   CGAU UCGACCA  UU CC UGGUUUAG     U
ACAGUCAAACCGACACUAG^    UGU    G       AC  C  C        GUAAA 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Star sequence

Gmo-Mir-133-P3-v1_5p*

mirBase accession

MIMAT0046029

Sequence

0- AGCUGGUAAAAUGGAACCAAAUC -23

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Mature sequence

Gmo-Mir-133-P3-v1_3p

mirBase accession

MIMAT0046030

Sequence

37- UUUGGUCCCCUUCAACCAGCUGU -60

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