MirGeneDB 2.1
MirGeneDB ID

Xla-Mir-1-P4b

Family name MIR-1 (all species)
Seed GGAAUGU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-1-P1a  Xla-Mir-1-P1b  Xla-Mir-1-P2c  Xla-Mir-1-P2d  Xla-Mir-1-P3a  Xla-Mir-1-P3b  Xla-Mir-1-P4a 
Orthologues Aae-Mir-1  Aca-Mir-1-P4  Ami-Mir-1-P4  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Cbr-Mir-1  Cel-Mir-1  Cgi-Mir-1  Cin-Mir-1  Cli-Mir-1-P4  Cmi-Mir-1-P4  Cpi-Mir-1-P4  Cte-Mir-1  Dan-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dpu-Mir-1  Dsi-Mir-1  Dya-Mir-1  Esc-Mir-1  Gga-Mir-1-P4  Hme-Mir-1  Isc-Mir-1  Lan-Mir-1  Lch-Mir-1-P4  Lgi-Mir-1  Mun-Mir-1-P4  Oan-Mir-1-P4  Obi-Mir-1  Ovu-Mir-1  Pbv-Mir-1-P4  Pfl-Mir-1  Pma-Mir-1-o4  Pmi-Mir-1  Sko-Mir-1  Spt-Mir-1-P4  Spu-Mir-1  Sto-Mir-1-P4  Tca-Mir-1  Tgu-Mir-1-P4  Xbo-Mir-1  Xtr-Mir-1-P4 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030727.1: 66535671-66535731 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCAAUGCCUUCUGAUGUCUAACUUUAGGGCACAUACUUCUUUAUAUGCCCAUACUGAAUGACAAUGUUAUGGAAUGUUAAGAAGUAUGUAACCUAAGGUUGCCUUUUCAGCUGGGCAACAG
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Structure
        10          20        30        40        50        60
UCAAUGCCUUCUGAUGUC--|         GC           U    GC     CUGAAU 
                    UAACUUUAGG  ACAUACUUCUU AUAU  CCAUA      G
                    GUUGGAAUCC  UGUAUGAAGAA UGUA  GGUAU      A
GACAACGGGUCGACUUUUCC^         AA           U    A-     UGUAAC 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Eg He Re St St St St
Star sequence

Xla-Mir-1-P4b_5p*
mirBase accessionNone
Sequence 
0- ACAUACUUCUUUAUAUGCCCAUA -23
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Mature sequence

Xla-Mir-1-P4b_3p
mirBase accessionNone
Sequence 
39- UGGAAUGUUAAGAAGUAUGUAA -61
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