MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-1-P25

Family name MIR-1 (all species)
Seed GGAAUGU
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-1b
Paralogues Sme-Mir-1-P24  Sme-Mir-1-P26 
Orthologues Aae-Mir-1  Aga-Mir-1  Agr-Mir-1  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Cbr-Mir-1  Cel-Mir-1  Cin-Mir-1  Cte-Mir-1  Dan-Mir-1  Dgr-Mir-1  Dlo-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dpu-Mir-1  Dsi-Mir-1  Dya-Mir-1  Eba-Mir-1  Egr-Mir-1  Esc-Mir-1  Gpa-Mir-1  Gsa-Mir-1  Gsp-Mir-1  Hme-Mir-1  Hmi-Mir-1  Hru-Mir-1  Isc-Mir-1  Lan-Mir-1  Lgi-Mir-1  Lhy-Mir-1  Llo-Mir-1  Mgi-Mir-1  Mom-Mir-1  Obi-Mir-1  Ofu-Mir-1  Ovu-Mir-1  Pau-Mir-1  Pca-Mir-1  Pcr-Mir-1  Pdu-Mir-1  Pfl-Mir-1  Ple-Mir-1  Pmi-Mir-1  Rph-Mir-1  Sko-Mir-1  Sma-Mir-1  Sne-Mir-1  Snu-Mir-1  Spu-Mir-1  Sro-Mir-1  Tca-Mir-1  Tur-Mir-1  War-Mir-1  Xbo-Mir-1 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Bilateria
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000241_dd_Smes_g4_241: 658560-658620 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1-P25)		 Mir-1-P26 NNSW01000241_dd_Smes_g4_241: 653765-653818 [-] UCSC Ensembl
Mir-1-P25 NNSW01000241_dd_Smes_g4_241: 658560-658620 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUGAAAUUUCAUUUUCCAACAACACACGGGCAUAAUUCAAGAUAUUCGAUAGGGUUUUUGGUAACUAAUGGAAUGUCGUGAAUUAUGGUCUUCAUUGUUGGUAAACUUCGAAAUUCAGUU
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Structure
        10           20        30        40        50          
UUUGAAAUUUCAUUUUC---|     CACAC  G         A       G  AGGGUUUU 
                    CAACAA     GG CAUAAUUCA GAUAUUC AU        \
                    GUUGUU     CU GUAUUAAGU CUGUAAG UA        U
UUGACUUAAAGCUUCAAAUG^     ACUU-  G         G       G  AUCAAUGG 
 .       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Star sequence

Sme-Mir-1-P25_5p*
mirBase accessionMIMAT0012091
Sequence 
0- GCAUAAUUCAAGAUAUUCGAUA -22
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Mature sequence

Sme-Mir-1-P25_3p
mirBase accessionMIMAT0003961
Sequence 
39- UGGAAUGUCGUGAAUUAUGGUC -61
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