MirGeneDB 3.0
MirGeneDB ID

Csc-Mir-1-P18a

Family name MIR-1 (all species)
Seed GGAAUGU
Species Arizona bark scorpion (Centruroides sculpturatus)
MiRBase ID
Paralogues Csc-Mir-1-P18b  Csc-Mir-1-P19 
Orthologues Aae-Mir-1  Aga-Mir-1  Agr-Mir-1  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Cbr-Mir-1  Cel-Mir-1  Cin-Mir-1  Cte-Mir-1  Dan-Mir-1  Dgr-Mir-1  Dlo-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dpu-Mir-1  Dsi-Mir-1  Dya-Mir-1  Eba-Mir-1  Egr-Mir-1  Esc-Mir-1  Gpa-Mir-1  Gsa-Mir-1  Gsp-Mir-1  Hme-Mir-1  Hmi-Mir-1  Hru-Mir-1  Isc-Mir-1  Lan-Mir-1  Lgi-Mir-1  Lhy-Mir-1  Llo-Mir-1  Mgi-Mir-1  Mom-Mir-1  Obi-Mir-1  Ofu-Mir-1  Ovu-Mir-1  Pau-Mir-1  Pca-Mir-1  Pcr-Mir-1  Pdu-Mir-1  Pfl-Mir-1  Ple-Mir-1  Pmi-Mir-1  Rph-Mir-1  Sko-Mir-1  Sma-Mir-1  Sne-Mir-1  Snu-Mir-1  Spu-Mir-1  Sro-Mir-1  Tca-Mir-1  Tur-Mir-1  War-Mir-1  Xbo-Mir-1 
Node of Origin (locus) C. sculpturatus
Node of Origin (family) Bilateria
Genome context
(GCF_000671375.1_CSC)		 NW_019386523.1: 39142-39203 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CCCGAGACAGAAGACAGCCUGGACGGGACUCCAUUCUUCCUUACUUCCCAUAUCUGCCGCCGAUGCUGUAUGGAAUGUAAAGAAGUAUGGAGCCUCGGCCACGGCCGUUCGUCGCUGGACCA
Get precursor sequence
Structure
        10          20        30        40        50        60
CCCGAGACAGAAGACAG-  -|  A    A      U    C    UUC     UCUGCCG 
                  CC UGG CGGG CUCCAU CUUC UUAC   CCAUA       C
                  GG ACC GCUC GAGGUA GAAG AAUG   GGUAU       C
ACCAGGUCGCUGCUUGCC  C^  G    C      U    A    UAA     GUCGUAG 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Fe Fe Fe Fe Ma Ma Ma
Star sequence

Csc-Mir-1-P18a_5p*
mirBase accessionNone
Sequence 
0- CCAUUCUUCCUUACUUCCCAUA -22
Get sequence
Mature sequence

Csc-Mir-1-P18a_3p
mirBase accessionNone
Sequence 
40- UGGAAUGUAAAGAAGUAUGGAG -62
Get sequence