MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-1-P11

Family name MIR-1 (all species)
Seed GGAAUGU
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-1-P9  Efe-Mir-1-P10  Efe-Mir-1-P12 
Orthologues Aae-Mir-1  Aga-Mir-1  Agr-Mir-1  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Cbr-Mir-1  Cel-Mir-1  Cin-Mir-1  Cte-Mir-1  Dan-Mir-1  Dgr-Mir-1  Dlo-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dpu-Mir-1  Dsi-Mir-1  Dya-Mir-1  Eba-Mir-1  Egr-Mir-1  Esc-Mir-1  Gpa-Mir-1  Gsa-Mir-1  Gsp-Mir-1  Hme-Mir-1  Hmi-Mir-1  Hru-Mir-1  Isc-Mir-1  Lan-Mir-1  Lgi-Mir-1  Lhy-Mir-1  Llo-Mir-1  Mgi-Mir-1  Mom-Mir-1  Obi-Mir-1  Ofu-Mir-1  Ovu-Mir-1  Pau-Mir-1  Pca-Mir-1  Pcr-Mir-1  Pdu-Mir-1  Pfl-Mir-1  Ple-Mir-1  Pmi-Mir-1  Rph-Mir-1  Sko-Mir-1  Sma-Mir-1  Sne-Mir-1  Snu-Mir-1  Spu-Mir-1  Sro-Mir-1  Tca-Mir-1  Tur-Mir-1  War-Mir-1  Xbo-Mir-1 
Node of Origin (locus) E. fetida
Node of Origin (family) Bilateria
Genome context
(Efe_combined)		 Efet.01.296011: 338-398 [-]
Precursor
(pre-Mir +30nt flank)
UGUGAGCAGACGAGAGGCACGUCUUCUACUCCGUACUUCUUUCCGCUCCGUACUCGAAUUAAUAUCGUAUGGAAUGUAGAGAAGUAUGUUGUACUAAACUGCCAUUACUUCAGUCUGUCCG
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Structure
        10        20          30        40        50          
UGUGAGCAGACGAGAGGCACGUCUUC--|  UC           C  C      CUCGAAU 
                            UAC  CGUACUUCUUU CG UCCGUA       \
                            AUG  GUAUGAAGAGA GU AGGUAU       U
GCCUGUCUGACUUCAUUACCGUCAAAUC^  UU           U  A      GCUAUAA 
 .       110       100        90        80        70
Deep sequencing
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CommentThere is a second Drosha cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Efe-Mir-1-P11_5p*
mirBase accessionNone
Sequence 
0- CCGUACUUCUUUCCGCUCCGUA -22
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Mature sequence

Efe-Mir-1-P11_3p
mirBase accessionNone
Sequence 
39- UGGAAUGUAGAGAAGUAUGUUG -61
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