MirGeneDB 3.0
MirGeneDB ID

Ava-Mir-1-P30

Family name MIR-1 (all species)
Seed GGAAUGU
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Mir-1-P29 
Orthologues Aae-Mir-1  Aga-Mir-1  Agr-Mir-1  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Cbr-Mir-1  Cel-Mir-1  Cin-Mir-1  Cte-Mir-1  Dan-Mir-1  Dgr-Mir-1  Dlo-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dpu-Mir-1  Dsi-Mir-1  Dya-Mir-1  Eba-Mir-1  Egr-Mir-1  Esc-Mir-1  Gpa-Mir-1  Gsa-Mir-1  Gsp-Mir-1  Hme-Mir-1  Hmi-Mir-1  Hru-Mir-1  Isc-Mir-1  Lan-Mir-1  Lgi-Mir-1  Lhy-Mir-1  Llo-Mir-1  Mgi-Mir-1  Mom-Mir-1  Obi-Mir-1  Ofu-Mir-1  Ovu-Mir-1  Pau-Mir-1  Pca-Mir-1  Pcr-Mir-1  Pdu-Mir-1  Pfl-Mir-1  Ple-Mir-1  Pmi-Mir-1  Rph-Mir-1  Sko-Mir-1  Sma-Mir-1  Sne-Mir-1  Snu-Mir-1  Spu-Mir-1  Sro-Mir-1  Tca-Mir-1  Tur-Mir-1  War-Mir-1  Xbo-Mir-1 
Node of Origin (locus) A. vaga
Node of Origin (family) Bilateria
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)		 CP075495.1: 7087251-7087310 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGUAAGUAUGAAUAUCGAAAGUUUCCAAACCGUACUUCUAAGACAGACCAUAUUGAAAAGAUAUCUUAUGGAAUGUAAUAGAAGUAUGCCGAGGGCUUUCACUAUCAUCGUCACGAAAUC
Get precursor sequence
Structure
        10            20        30        40        50         
UGUAAGUAUGAAUAUCG----|    UU  AAAC          AG   GA     UUGAAA 
                     AAAGU  CC    CGUACUUCUA  ACA  CCAUA      A
                     UUUCG  GG    GUAUGAAGAU  UGU  GGUAU      G
CUAAAGCACUGCUACUAUCAC^    --  AGCC          AA   AA     UCUAUA 
.       110       100          90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sr Sr
Star sequence

Ava-Mir-1-P30_5p*
mirBase accessionNone
Sequence 
0- CGUACUUCUAAGACAGACCAUA -22
Get sequence
Mature sequence

Ava-Mir-1-P30_3p
mirBase accessionNone
Sequence 
38- UGGAAUGUAAUAGAAGUAUGCC -60
Get sequence