MirGeneDB 3.0

MirGeneDB ID

Npo-Mir-1-P21

Family name MIR-1 (all species)
Seed GGAAUGU
Species Chambered Nautilus (Nautilus pompilius)
MiRBase ID
Paralogues Npo-Mir-1-P20 
Orthologues Aae-Mir-1  Aga-Mir-1  Agr-Mir-1  Asu-Mir-1  Bfl-Mir-1  Bge-Mir-1  Bla-Mir-1  Cbr-Mir-1  Cel-Mir-1  Cin-Mir-1  Cte-Mir-1  Dan-Mir-1  Dgr-Mir-1  Dlo-Mir-1  Dma-Mir-1  Dme-Mir-1  Dmo-Mir-1  Dpu-Mir-1  Dsi-Mir-1  Dya-Mir-1  Eba-Mir-1  Egr-Mir-1  Esc-Mir-1  Gpa-Mir-1  Gsa-Mir-1  Gsp-Mir-1  Hme-Mir-1  Hmi-Mir-1  Hru-Mir-1  Isc-Mir-1  Lan-Mir-1  Lgi-Mir-1  Lhy-Mir-1  Llo-Mir-1  Mgi-Mir-1  Mom-Mir-1  Obi-Mir-1  Ofu-Mir-1  Ovu-Mir-1  Pau-Mir-1  Pca-Mir-1  Pcr-Mir-1  Pdu-Mir-1  Pfl-Mir-1  Ple-Mir-1  Pmi-Mir-1  Rph-Mir-1  Sko-Mir-1  Sma-Mir-1  Sne-Mir-1  Snu-Mir-1  Spu-Mir-1  Sro-Mir-1  Tca-Mir-1  Tur-Mir-1  War-Mir-1  Xbo-Mir-1 
Node of Origin (locus) N. pompilius
Node of Origin (family) Bilateria
Genome context
(GCA_018389105_NPO)
JACATO010002176.1: 1910758-1910818 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CAGGGACUACUCCUGUGCUGUGUGCACGAGACAUACUUCUUUACUAUCCCAUAGACUGUCACAAAAUUAUGGAAUGUAAAGAAGUAUGUAUUCUGUGCAUGGACUGACUUCAAUGCCGAUG
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Structure
        10          20        30         40        50        60
CAGGGACUACUCCUGUG--|    UG  C   -              U  C     GACUGU 
                   CUGUG  CA GAG ACAUACUUCUUUAC AU CCAUA      C
                   GGUAC  GU CUU UGUAUGAAGAAAUG UA GGUAU      A
GUAGCCGUAACUUCAGUCA^    GU  -   A              -  A     UAAAAC 
 .       110       100         90        80         70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Npo-Mir-1-P21_5p* (predicted)

mirBase accessionNone
Sequence
0- ACAUACUUCUUUACUAUCCCAUA -23
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Mature sequence

Npo-Mir-1-P21_3p (predicted)

mirBase accessionNone
Sequence
39- UGGAAUGUAAAGAAGUAUGUAU -61
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