MirGeneDB ID | Npo-Mir-1-P20 |
---|---|
Family name | MIR-1 (all species) |
Seed | GGAAUGU |
Species | Chambered Nautilus (Nautilus pompilius) |
MiRBase ID | |
Paralogues | Npo-Mir-1-P21 |
Orthologues | Aae-Mir-1 Aga-Mir-1 Agr-Mir-1 Asu-Mir-1 Bfl-Mir-1 Bge-Mir-1 Bla-Mir-1 Cbr-Mir-1 Cel-Mir-1 Cin-Mir-1 Cte-Mir-1 Dan-Mir-1 Dgr-Mir-1 Dlo-Mir-1 Dma-Mir-1 Dme-Mir-1 Dmo-Mir-1 Dpu-Mir-1 Dsi-Mir-1 Dya-Mir-1 Eba-Mir-1 Egr-Mir-1 Esc-Mir-1 Gpa-Mir-1 Gsa-Mir-1 Gsp-Mir-1 Hme-Mir-1 Hmi-Mir-1 Hru-Mir-1 Isc-Mir-1 Lan-Mir-1 Lgi-Mir-1 Lhy-Mir-1 Llo-Mir-1 Mgi-Mir-1 Mom-Mir-1 Obi-Mir-1 Ofu-Mir-1 Ovu-Mir-1 Pau-Mir-1 Pca-Mir-1 Pcr-Mir-1 Pdu-Mir-1 Pfl-Mir-1 Ple-Mir-1 Pmi-Mir-1 Rph-Mir-1 Sko-Mir-1 Sma-Mir-1 Sne-Mir-1 Snu-Mir-1 Spu-Mir-1 Sro-Mir-1 Tca-Mir-1 Tur-Mir-1 War-Mir-1 Xbo-Mir-1 |
Node of Origin (locus) | N. pompilius |
Node of Origin (family) | Bilateria |
Genome context (GCA_018389105_NPO) |
JACATO010002176.1: 801170-801230 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | CAGGGACUACUCCUGUGCUGUGUGCACGAGACAUACUUCUUUACUAUCCCAUAGACUGUCACAAAAUUAUGGAAUGUAAAGAAGUAUGUAUUCUGUGCAUGGACUGACUUCAAUGCCGAUGGet precursor sequence |
Structure | 10 20 30 40 50 60 CAGGGACUACUCCUGUG--| UG C - U C GACUGU CUGUG CA GAG ACAUACUUCUUUAC AU CCAUA C GGUAC GU CUU UGUAUGAAGAAAUG UA GGUAU A GUAGCCGUAACUUCAGUCA^ GU - A - A UAAAAC . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Star sequence | Npo-Mir-1-P20_5p* (predicted) |
mirBase accession | None |
Sequence |
0- ACAUACUUCUUUACUAUCCCAUA -23
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|
Mature sequence | Npo-Mir-1-P20_3p (predicted) |
mirBase accession | None |
Sequence |
39- UGGAAUGUAAAGAAGUAUGUAU -61
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|