MirGeneDB ID | Ebu-Mir-1-P7 |
Family name |
MIR-1 (all species) |
Seed |
GGAAUGU |
Species |
Inshore hagfish (Eptatretus burgeri) |
MiRBase ID |
|
Paralogues |
Ebu-Mir-1-P5
Ebu-Mir-1-P6a
Ebu-Mir-1-P6b
Ebu-Mir-1-P8
|
Orthologues |
Aae-Mir-1
Aga-Mir-1
Agr-Mir-1
Asu-Mir-1
Bfl-Mir-1
Bge-Mir-1
Bla-Mir-1
Cbr-Mir-1
Cel-Mir-1
Cin-Mir-1
Cte-Mir-1
Dan-Mir-1
Dgr-Mir-1
Dlo-Mir-1
Dma-Mir-1
Dme-Mir-1
Dmo-Mir-1
Dpu-Mir-1
Dsi-Mir-1
Dya-Mir-1
Eba-Mir-1
Egr-Mir-1
Esc-Mir-1
Gpa-Mir-1
Gsa-Mir-1
Gsp-Mir-1
Hme-Mir-1
Hmi-Mir-1
Hru-Mir-1
Isc-Mir-1
Lan-Mir-1
Lgi-Mir-1
Lhy-Mir-1
Llo-Mir-1
Mgi-Mir-1
Mom-Mir-1
Obi-Mir-1
Ofu-Mir-1
Ovu-Mir-1
Pau-Mir-1
Pca-Mir-1
Pcr-Mir-1
Pdu-Mir-1
Pfl-Mir-1
Ple-Mir-1
Pmi-Mir-1
Rph-Mir-1
Sko-Mir-1
Sma-Mir-1
Sne-Mir-1
Snu-Mir-1
Spu-Mir-1
Sro-Mir-1
Tca-Mir-1
Tur-Mir-1
War-Mir-1
Xbo-Mir-1
|
Node of Origin (locus) |
E. burgeri
|
Node of Origin (family) |
Bilateria
|
Genome context (Eburgeri_3) |
FYBX02010313.1: 2329849-2329912 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUGCUCAAUGCCUCCAACCCUGCCAAGUUCACGUACUUCUUUAUAUACCCAUAUAUGAGUGAUAGACUGUUAUGGAAUGUAAAGAAGUAUGUAUACUUGGUUUAGGGGAUUCAUCGGUGGAGUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CUGCUCAAUGCCUCCAAC --| UC AC UAUGAGUG
CCU GCCAAGU ACGUACUUCUUUAUAU CCAUA \
GGA UGGUUCA UGUAUGAAGAAAUGUA GGUAU A
UUGAGGUGGCUACUUAGG UU^ UA A- UGUCAGAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ebu-Mir-1-P7_5p* |
mirBase accession | None |
Sequence |
0- ACGUACUUCUUUAUAUACCCAUA -23
Get sequence
|
Mature sequence |
Ebu-Mir-1-P7_3p |
mirBase accession | None |
Sequence |
42- UGGAAUGUAAAGAAGUAUGUAU -64
Get sequence
|