MirGeneDB ID | Dpu-Mir-12603 |
Family name |
MIR-12603 (all species) |
Seed |
GUGAUGU |
Species |
Common water flea (Daphnia pulex) |
MiRBase ID |
|
Paralogues |
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Orthologues |
Dma-Mir-12603
|
Node of Origin (locus) |
Daphnia
|
Node of Origin (family) |
Daphnia
|
Genome context (Daphnia_pulex.V1.0) |
DAPPUscaffold_58: 365534-365601 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGGCGUUUCUCCGAAACGUUGCUGAGCUGCUGUGAUGUAGAUUUUAAUACCUUGUGAUCUUGAGUAACUGUUCAAGUGAUUAAUAUUUACAUCACCUCAGCUCGGUGGCGACGAUCUCCCAACCGAUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGGCGUUUCUCCGAAAC--| UG CU U AC UGUGAUCUUG
GU CUGAGCUG GUGAUGUAGAU UUAAU CU A
CG GGCUCGAC CACUACAUUUA AAUUA GA G
CUAGCCAACCCUCUAGCAG^ GU UC U GU ACUUGUCAAU
120 110 100 90 80 70 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Dpu-Mir-12603_5p |
mirBase accession | None |
Sequence |
0- UGUGAUGUAGAUUUUAAUACCU -22
Get sequence
|
Star sequence |
Dpu-Mir-12603_3p* |
mirBase accession | None |
Sequence |
46- UGAUUAAUAUUUACAUCACCUC -68
Get sequence
|