MirGeneDB 3.0

MirGeneDB ID

Dpu-Mir-12603

Family name MIR-12603 (all species)
Seed GUGAUGU
Species Common water flea (Daphnia pulex)
MiRBase ID
Paralogues
Orthologues Dma-Mir-12603 
Node of Origin (locus) Daphnia
Node of Origin (family) Daphnia
Genome context
(Daphnia_pulex.V1.0)
DAPPUscaffold_58: 365534-365601 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGGCGUUUCUCCGAAACGUUGCUGAGCUGCUGUGAUGUAGAUUUUAAUACCUUGUGAUCUUGAGUAACUGUUCAAGUGAUUAAUAUUUACAUCACCUCAGCUCGGUGGCGACGAUCUCCCAACCGAUC
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Structure
        10          20        30        40        50        60   
UGGCGUUUCUCCGAAAC--| UG        CU           U     AC  UGUGAUCUUG 
                   GU  CUGAGCUG  GUGAUGUAGAU UUAAU  CU          A
                   CG  GGCUCGAC  CACUACAUUUA AAUUA  GA          G
CUAGCCAACCCUCUAGCAG^ GU        UC           U     GU  ACUUGUCAAU 
      120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Mature sequence

Dpu-Mir-12603_5p

mirBase accessionNone
Sequence
0- UGUGAUGUAGAUUUUAAUACCU -22
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Star sequence

Dpu-Mir-12603_3p*

mirBase accessionNone
Sequence
46- UGAUUAAUAUUUACAUCACCUC -68
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