MirGeneDB 3.0

MirGeneDB ID

Dma-Mir-12603

Family name MIR-12603 (all species)
Seed GUGAUGU
Species Large common water flea (Daphnia magna)
MiRBase ID
Paralogues
Orthologues Dpu-Mir-12603 
Node of Origin (locus) Daphnia
Node of Origin (family) Daphnia
Genome context
(DMA_ASM399081)
NC_046182.1: 5639526-5639593 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CAAAGAGACGUGGAAACGUUGCUGAGCUGCUGUGAUGUAGAUUUUAAUACCUUGUGAUCUUGAGUAACUGUUCAAGUGAUUAAUAUUUACAUCACCUCAGCUCGGUGGCGACGAUCUCCGACCCACAC
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Structure
        10          20        30        40        50        60   
CAAAGAGACGUGGAAAC--| UG        CU           U     AC  UGUGAUCUUG 
                   GU  CUGAGCUG  GUGAUGUAGAU UUAAU  CU          A
                   CG  GGCUCGAC  CACUACAUUUA AAUUA  GA          G
CACACCCAGCCUCUAGCAG^ GU        UC           U     GU  ACUUGUCAAU 
      120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14
Mature sequence

Dma-Mir-12603_5p

mirBase accessionNone
Sequence
0- UGUGAUGUAGAUUUUAAUACCU -22
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Star sequence

Dma-Mir-12603_3p*

mirBase accessionNone
Sequence
46- UGAUUAAUAUUUACAUCACCUC -68
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