| MirGeneDB ID | Dma-Mir-12603 |
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| Family name |
MIR-12603 (all species) |
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| Seed |
GUGAUGU |
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| Species |
Large common water flea (Daphnia magna) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Dpu-Mir-12603
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| Node of Origin (locus) |
Daphnia
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| Node of Origin (family) |
Daphnia
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Genome context
(DMA_ASM399081) |
NC_046182.1: 5639526-5639593 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAAAGAGACGUGGAAACGUUGCUGAGCUGCUGUGAUGUAGAUUUUAAUACCUUGUGAUCUUGAGUAACUGUUCAAGUGAUUAAUAUUUACAUCACCUCAGCUCGGUGGCGACGAUCUCCGACCCACAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CAAAGAGACGUGGAAAC--| UG CU U AC UGUGAUCUUG
GU CUGAGCUG GUGAUGUAGAU UUAAU CU A
CG GGCUCGAC CACUACAUUUA AAUUA GA G
CACACCCAGCCUCUAGCAG^ GU UC U GU ACUUGUCAAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Mature sequence |
Dma-Mir-12603_5p |
| mirBase accession | None |
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| Sequence |
0- UGUGAUGUAGAUUUUAAUACCU -22
Get sequence
|
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| Star sequence |
Dma-Mir-12603_3p* |
| mirBase accession | None |
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| Sequence |
46- UGAUUAAUAUUUACAUCACCUC -68
Get sequence
|
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