| MirGeneDB ID | Dpu-Novel-4 |
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| Family name |
DPU-NOVEL-4 (all species) |
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| Seed |
AAAAUUU |
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| Species |
Common water flea (Daphnia pulex) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
D. pulex
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| Node of Origin (family) |
D. pulex
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Genome context
(Daphnia_pulex.V1.0) |
DAPPUscaffold_6: 2376718-2376781 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAGUGAGGCUUUGAUAUCCUGGGGAUGUAAAGGAGAUUGGUUAAAUUUAUGAGUGAAAUGUAUGAAUCCUCUAAAAUUUGCCUCAACCUCCUAAACAUUCACAGGCCAAACCAGCAAAUCUACU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CAGUGAGGCUUUGAUAU-- G AA A -|U AU GUGAAAUG
CCUG GGAUGU AGGAG UUG G UAAAUUU GA \
GGAC CUUACA UCCUC AAC C GUUUAAA CU U
UCAUCUAAACGACCAAACC A AA C U^C AU CCUAAGUA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a mismatch between the 5p reads and the genome but everything else looks good. This could be either a mis-sequence or a SNP. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Star sequence |
Dpu-Novel-4_5p* |
| mirBase accession | None |
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| Sequence |
0- AGGAGAUUGGUUAAAUUUAUGA -22
Get sequence
|
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| Mature sequence |
Dpu-Novel-4_3p |
| mirBase accession | None |
|---|
| Sequence |
41- UAAAAUUUGCCUCAACCUCCUAA -64
Get sequence
|
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