| MirGeneDB ID | Dpu-Novel-4 |
|---|---|
| Family name | DPU-NOVEL-4 (all species) |
| Seed | AAAAUUU |
| Species | Common water flea (Daphnia pulex) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | |
| Node of Origin (locus) | D. pulex |
| Node of Origin (family) | D. pulex |
| Genome context (Daphnia_pulex.V1.0) |
DAPPUscaffold_6: 2376718-2376781 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | CAGUGAGGCUUUGAUAUCCUGGGGAUGUAAAGGAGAUUGGUUAAAUUUAUGAGUGAAAUGUAUGAAUCCUCUAAAAUUUGCCUCAACCUCCUAAACAUUCACAGGCCAAACCAGCAAAUCUACUGet precursor sequence |
| Structure | 10 20 30 40 50 60 CAGUGAGGCUUUGAUAU-- G AA A -|U AU GUGAAAUG CCUG GGAUGU AGGAG UUG G UAAAUUU GA \ GGAC CUUACA UCCUC AAC C GUUUAAA CU U UCAUCUAAACGACCAAACC A AA C U^C AU CCUAAGUA 120 110 100 90 80 70 |
| Deep sequencing | |
| Comment | There is a mismatch between the 5p reads and the genome but everything else looks good. This could be either a mis-sequence or a SNP. |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Star sequence | Dpu-Novel-4_5p* |
| mirBase accession | None |
| Sequence |
0- AGGAGAUUGGUUAAAUUUAUGA -22
Get sequence
|
| Mature sequence | Dpu-Novel-4_3p |
| mirBase accession | None |
| Sequence |
41- UAAAAUUUGCCUCAACCUCCUAA -64
Get sequence
|
