| MirGeneDB ID | Dpu-Mir-12606 |
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| Family name |
MIR-12606 (all species) |
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| Seed |
CUUGGUU |
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| Species |
Common water flea (Daphnia pulex) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Dma-Mir-12606
|
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| Node of Origin (locus) |
Daphnia
|
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| Node of Origin (family) |
Daphnia
|
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Genome context
(Daphnia_pulex.V1.0) |
DAPPUscaffold_24: 361694-361754 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGAACCUACAUUUUUUUGCUCGACUGGUGCUCUUGGUUGCUCGGUCUUUAGGAUUAUGAUUUAACAUUCCUAAAGCUCGGCUAGCAGGAUCCACCAAUUAAGCUUGGACUACUUACAAUCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UGAACCUACAUUUUUUU- CG C C-| GUU U GU AUUAUGA
GCU A UGGUG UCUUG GC CG CUUUAGG U
CGA U ACCAC AGGAC CG GC GAAAUCC U
UCUAACAUUCAUCAGGUU AU A CU^ GAU - UC UUACAAU
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Dpu-Mir-12606_5p |
| mirBase accession | None |
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| Sequence |
0- UCUUGGUUGCUCGGUCUUUAGG -22
Get sequence
|
|---|
| Co-mature sequence |
Dpu-Mir-12606_3p |
| mirBase accession | None |
|---|
| Sequence |
40- UAAAGCUCGGCUAGCAGGAUC -61
Get sequence
|
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