| MirGeneDB ID | Dma-Mir-12606 |
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| Family name |
MIR-12606 (all species) |
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| Seed |
CUUGGUU |
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| Species |
Large common water flea (Daphnia magna) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Dpu-Mir-12606
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| Node of Origin (locus) |
Daphnia
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| Node of Origin (family) |
Daphnia
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Genome context
(DMA_ASM399081) |
NC_046174.1: 2509231-2509290 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UACAUAAUUUGUUUCAUGCGUAAUUGGUGCUCUUGGUUGCUCGGUCUUUAGGAUUUUUAUCAUCAUUCCUAAAGCUCGGCUAGCAGGAUCCACCAUUUUCGCUAUGUCUACCGUAACAAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UACAUAAUUUGUUUCAU- U U C-| GUU U GU AUUUUUA
GCG AA UGGUG UCUUG GC CG CUUUAGG \
CGC UU ACCAC AGGAC CG GC GAAAUCC U
AAACAAUGCCAUCUGUAU U U CU^ GAU - UC UUACUAC
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| Comment | There is a second Dicer cut +1 on both arms. |
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Dma-Mir-12606_5p |
| mirBase accession | None |
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| Sequence |
0- UCUUGGUUGCUCGGUCUUUAGG -22
Get sequence
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| Star sequence |
Dma-Mir-12606_3p* |
| mirBase accession | None |
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| Sequence |
39- UAAAGCUCGGCUAGCAGGAUC -60
Get sequence
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