| MirGeneDB ID | Dpu-Mir-12607 |
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| Family name |
MIR-12607 (all species) |
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| Seed |
ACUGGGU |
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| Species |
Common water flea (Daphnia pulex) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Dma-Mir-12607-v1
Dma-Mir-12607-v2
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| Node of Origin (locus) |
Daphnia
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| Node of Origin (family) |
Daphnia
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Genome context
(Daphnia_pulex.V1.0) |
DAPPUscaffold_24: 361858-361920 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGAGCUCGACACAGAUAGCUGUUUUUAUUCGACACUACAUGUAUCUAGUAUGACCAGUUAUUACGAGUCACUGGGUAUUCAUUGUAGGGUCGAACAAUUUCAGCCAUUUUCAUCAGUUCGGGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AGAGCUCGACACAGAUA-- UUU A A U---| AU CAGUU
GCUG UU UUCGAC CUACA GUAUCUAGU GAC A
CGAC AA AAGCUG GAUGU UAUGGGUCA CUG U
CGGGCUUGACUACUUUUAC UUU C G UACU^ -- AGCAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Dpu-Mir-12607_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- GACACUACAUGUAUCUAGUAUGAC -24
Get sequence
|
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| Mature sequence |
Dpu-Mir-12607_3p |
| mirBase accession | None |
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| Sequence |
38- CACUGGGUAUUCAUUGUAGGGUCGA -63
Get sequence
|
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