MirGeneDB 3.0

MirGeneDB ID

Dpu-Mir-12607

Family name MIR-12607 (all species)
Seed ACUGGGU
Species Common water flea (Daphnia pulex)
MiRBase ID
Paralogues
Orthologues Dma-Mir-12607-v1  Dma-Mir-12607-v2 
Node of Origin (locus) Daphnia
Node of Origin (family) Daphnia
Genome context
(Daphnia_pulex.V1.0)
DAPPUscaffold_24: 361858-361920 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AGAGCUCGACACAGAUAGCUGUUUUUAUUCGACACUACAUGUAUCUAGUAUGACCAGUUAUUACGAGUCACUGGGUAUUCAUUGUAGGGUCGAACAAUUUCAGCCAUUUUCAUCAGUUCGGGC
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Structure
        10          20        30        40           50        60
AGAGCUCGACACAGAUA--    UUU  A      A     U---|        AU   CAGUU 
                   GCUG   UU UUCGAC CUACA    GUAUCUAGU  GAC     A
                   CGAC   AA AAGCUG GAUGU    UAUGGGUCA  CUG     U
CGGGCUUGACUACUUUUAC    UUU  C      G     UACU^        --   AGCAU 
 120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
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Star sequence

Dpu-Mir-12607_5p* (predicted)

mirBase accessionNone
Sequence
0- GACACUACAUGUAUCUAGUAUGAC -24
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Mature sequence

Dpu-Mir-12607_3p

mirBase accessionNone
Sequence
38- CACUGGGUAUUCAUUGUAGGGUCGA -63
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