| MirGeneDB ID | Dpu-Novel-1 |
|---|
| Family name |
DPU-NOVEL-1 (all species) |
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| Seed |
GUGAUGU |
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| Species |
Common water flea (Daphnia pulex) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
Daphnia
|
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| Node of Origin (family) |
Daphnia
|
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Genome context
(Daphnia_pulex.V1.0) |
DAPPUscaffold_58: 365534-365601 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGGCGUUUCUCCGAAACGUUGCUGAGCUGCUGUGAUGUAGAUUUUAAUACCUUGUGAUCUUGAGUAACUGUUCAAGUGAUUAAUAUUUACAUCACCUCAGCUCGGUGGCGACGAUCUCCCAACCGAUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UGGCGUUUCUCCGAAAC--| UG CU U AC UGUGAUCUUG
GU CUGAGCUG GUGAUGUAGAU UUAAU CU A
CG GGCUCGAC CACUACAUUUA AAUUA GA G
CUAGCCAACCCUCUAGCAG^ GU UC U GU ACUUGUCAAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Dpu-Novel-1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGUGAUGUAGAUUUUAAUACCU -22
Get sequence
|
|---|
| Star sequence |
Dpu-Novel-1_3p* |
| mirBase accession | None |
|---|
| Sequence |
46- UGAUUAAUAUUUACAUCACCUC -68
Get sequence
|
|---|
