| MirGeneDB ID | Dpu-Novel-1 |
|---|
| Family name |
DPU-NOVEL-1 (all species) |
|---|
| Seed |
UACAUAU |
|---|
| Species |
Common water flea (Daphnia pulex) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
D. pulex
|
|---|
| Node of Origin (family) |
D. pulex
|
|---|
Genome context
(Daphnia_pulex.V1.0) |
DAPPUscaffold_6: 2376913-2376973 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAGAAAAAUCAAAUUAUGGUUCACAUGCAAAGACUUAGCACCAAUCUGUAACUAUAGUAUAAUUGCAGUUACAUAUUUCUGUUAGGUUCUUGCGGAAAGACUUGGCAUCACAUCAUUAGAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAGAAAAAUCAAAUUAU--| CACA AG CC C AUAGUA
GGUU UGCAA ACUUAGCA AAU UGUAACU \
UCAG GCGUU UGGAUUGU UUA ACAUUGA U
UAGAUUACUACACUACGGU^ AAAG CU CU U CGUUAA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Dpu-Novel-1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGACUUAGCACCAAUCUGUAACU -23
Get sequence
|
|---|
| Mature sequence |
Dpu-Novel-1_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UUACAUAUUUCUGUUAGGUUCUU -61
Get sequence
|
|---|
