MirGeneDB 3.0
MirGeneDB ID

Dpu-Mir-282

Family name MIR-282 (all species)
Seed AGCCUCU
Species Common water flea (Daphnia pulex)
MiRBase ID
Paralogues
Orthologues Aae-Mir-282-P1  Aae-Mir-282-P2  Aga-Mir-282  Bge-Mir-282  Dan-Mir-282  Dma-Mir-282-v1  Dma-Mir-282-v2  Dme-Mir-282  Dmo-Mir-282  Dsi-Mir-282  Dya-Mir-282  Gpa-Mir-282  Hme-Mir-282  Tca-Mir-282 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Pancrustacea
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_57: 216593-216687 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAUUUGGAAUUCAAACAGAUACGUGCUGCGUAGCCUCUCCUAGGCUUUGUCUUGUGAACGACGGAAUUUUUAUAUUUUCGUCGGGAAAAACUGAAAUUCUAGACAACGUCUCGGAGAGCGCUUCGCAGAGAGUAUUGACUGUCAACAUUCCAGAA
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Structure
        10          20        30         40        50        60        70      
AAUUUGGAAUUCAAACA--     GUG     U   -|     U    U      UGUGAACGACGGAAUUUUUAUAU 
                   GAUAC   CUGCG AGC CUCUCC AGGC UUGUCU                       U
                   UUAUG   GACGC UCG GAGAGG UCUG AACAGA                       U
AAGACCUUACAACUGUCAG     AGA     U   C^     C    C      UCUUAAAGUCAAAAAGGGCUGCU 
   150       140       130       120       110       100        90        80
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Dpu-Mir-282_5p
mirBase accessionNone
Sequence 
0- UAGCCUCUCCUAGGCUUUGUCU -22
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Star sequence

Dpu-Mir-282_3p*
mirBase accessionNone
Sequence 
72- ACAACGUCUCGGAGAGCGCUUCG -95
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