| MirGeneDB ID | Dma-Mir-282-v1 |
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| Family name |
MIR-282 (all species) |
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| Seed |
CAACGUC |
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| Species |
Large common water flea (Daphnia magna) |
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| MiRBase ID |
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| Paralogues |
Dma-Mir-282-v2
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| Orthologues |
Aga-Mir-282
Bge-Mir-282
Dan-Mir-282
Dme-Mir-282
Dmo-Mir-282
Dpu-Mir-282
Dsi-Mir-282
Dya-Mir-282
Gpa-Mir-282
Hme-Mir-282
Tca-Mir-282
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| Node of Origin (locus) |
Pancrustacea
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| Node of Origin (family) |
Pancrustacea
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Genome context
(DMA_ASM399081) |
NC_046178.1: 847714-847800 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCCCACAAUACGCAUAACAUAUUUGCUAGGUAGCCUCUCCUAGGCUUUGUCUUGUUGACGUUUGGGUUCUUGGCUUCGGCAAAAGAAAUUCUAGACAACGUCUUGGAGAGCGCUACUUAGCAUAUAUCGAAAGUCAACCGGUACACG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60 70
UCCCACAAUACGCAUAAC-- U -| U U UGUUGACGUUUGGGUUCUU
AUAU UGCUAGGUAGC CUCUCC AGGC UUGUCU G
UAUA ACGAUUCAUCG GAGAGG UCUG AACAGA G
GCACAUGGCCAACUGAAAGC U C^ U C UCUUAAAGAAAACGGCUUC
140 130 120 110 100 90 80 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Star sequence |
Dma-Mir-282-v1_5p* |
| mirBase accession | None |
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| Sequence |
0- UAGCCUCUCCUAGGCUUUGUCU -22
Get sequence
|
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| Mature sequence |
Dma-Mir-282-v1_3p |
| mirBase accession | None |
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| Sequence |
64- ACAACGUCUUGGAGAGCGCUACU -87
Get sequence
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