| MirGeneDB ID | Dpu-Mir-87-o5a |
|---|
| Family name |
MIR-87 (all species) |
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| Seed |
UGAGCAA |
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| Species |
Common water flea (Daphnia pulex) |
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| MiRBase ID |
|
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| Paralogues |
Dpu-Mir-87-o5b
|
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| Orthologues |
Dma-Mir-87-o5a
Gsp-Mir-87
Sne-Mir-87
|
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| Node of Origin (locus) |
Daphnia
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(Daphnia_pulex.V1.0) |
DAPPUscaffold_1: 2190896-2190980 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUGUGCCUCGACGUUUCACGUCCGCCUGCCGGGCCUGAUCCUUUGCUCAACCUGUGAUCGUAAACCUUGUAUUACCCUCCUUUGCGGGAGGAGGUGAGCAAAGUUUCAGGUGCGUCAGUCGGAUCGUCUUUCUCACCGCACAAUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70
GUGUGCCUCGACGUUUC- -| C C G UC A GUGAUCGUAAACCUUGUA
ACG UCCG CUG CG GCCUGA CUUUGCUCA CCU U
UGC AGGC GAC GC UGGACU GAAACGAGU GGA U
UUAACACGCCACUCUUUC U^ U U G UU - GGAGGGCGUUUCCUCCCA
140 130 120 110 100 90 80 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Dpu-Mir-87-o5a_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GGGCCUGAUCCUUUGCUCAACCU -23
Get sequence
|
|---|
| Mature sequence |
Dpu-Mir-87-o5a_3p |
| mirBase accession | None |
|---|
| Sequence |
63- GUGAGCAAAGUUUCAGGUGCGU -85
Get sequence
|
|---|
