| MirGeneDB ID | Dma-Mir-87-o5a |
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| Family name |
MIR-87 (all species) |
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| Seed |
UGAGCAA |
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| Species |
Large common water flea (Daphnia magna) |
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| MiRBase ID |
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| Paralogues |
Dma-Mir-87-o5b
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| Orthologues |
Dpu-Mir-87-o5a
Gsp-Mir-87
Sne-Mir-87
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| Node of Origin (locus) |
Daphnia
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| Node of Origin (family) |
Protostomia
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Genome context
(DMA_ASM399081) |
NC_046176.1: 6157349-6157434 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUUGCCAACAACUUUUCACGUCCGCCUGCCGGGCCUGAUCCUUUGCUCAACCUGUGAUCGUAAACCUAGUAUUACCCUCCUUGUGCGGGAGGAGGUGAGCAAAGUUUCAGGUGCGUUAGUUGGUUGCGUGCAUCUCAUCUCAAUGA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60 70
UUUGCCAACAACUUUUCA --| C C G UC A GUGAUCGUAAACCUAGUAU
CGU CCG CUG CG GCCUGA CUUUGCUCA CCU \
GCG GGU GAU GC UGGACU GAAACGAGU GGA U
AGUAACUCUACUCUACGU UU^ U U G UU - GGAGGGCGUGUUCCUCCCA
140 130 120 110 100 90 80 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UGUG in loop |
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Tissue expression
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| Star sequence |
Dma-Mir-87-o5a_5p* |
| mirBase accession | None |
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| Sequence |
0- GGGCCUGAUCCUUUGCUCAACCU -23
Get sequence
|
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| Mature sequence |
Dma-Mir-87-o5a_3p |
| mirBase accession | None |
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| Sequence |
64- GUGAGCAAAGUUUCAGGUGCGU -86
Get sequence
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