| MirGeneDB ID | Dpu-Mir-87-o5b |
|---|
| Family name |
MIR-87 (all species) |
|---|
| Seed |
UGAGCAA |
|---|
| Species |
Common water flea (Daphnia pulex) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Dpu-Mir-87-o5a
|
|---|
| Orthologues |
Dma-Mir-87-o5b
|
|---|
| Node of Origin (locus) |
Daphnia
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(Daphnia_pulex.V1.0) |
DAPPUscaffold_1: 2191079-2191142 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UCCAUCUAGAUUUGGUGUAUUUACGCUCUCAGCCUGAUCCUUGCUCGACCUAAGCCUUUGACAAUGAGCGAGGUGAGCAAAGUUUCAGGUGCGUGAGCGGCACCUCCAGUCGUCCUAUCCGAUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UCCAUCUAGAUUUGGUGUAUUUA-- UCA- UC -| G AAGCCUUUG
CGCUC GCCUGA C UUGCUC ACCU \
GCGAG UGGACU G AACGAG UGGA A
CUAGCCUAUCCUGCUGACCUCCACG UGCG UU A^ - GCGAGUAAC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Dpu-Mir-87-o5b_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGCCUGAUCCUUGCUCGACCU -21
Get sequence
|
|---|
| Mature sequence |
Dpu-Mir-87-o5b_3p |
| mirBase accession | None |
|---|
| Sequence |
42- GUGAGCAAAGUUUCAGGUGCGU -64
Get sequence
|
|---|
