| MirGeneDB ID | Dpu-Novel-2 |
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| Family name |
DPU-NOVEL-2 (all species) |
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| Seed |
CGUGGAG |
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| Species |
Common water flea (Daphnia pulex) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
D. pulex
|
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| Node of Origin (family) |
D. pulex
|
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Genome context
(Daphnia_pulex.V1.0) |
DAPPUscaffold_4: 2548779-2548846 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
ACUAACUUAUUGCACCAAGUGACGUCUUCCUCGUGGAGUAUAGGAGAAUCCCGUAUAUCGUCUGUUUCACUUCUGAUUCUCCAUUACUCCUUUGACGGAGGAUGUCGCAAAUUAUUCAACAUGGCCAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
ACUAACUUAUUGCACCAA-- - U-| UA CCGUAUAUCGU
GUGACGUCUUCC UCG GGAGUA GGAGAAUC C
CGCUGUAGGAGG AGU CCUCAU CCUCUUAG U
UACCGGUACAACUUAUUAAA C UU^ UA UCUUCACUUUG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Dpu-Novel-2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCGUGGAGUAUAGGAGAAUCC -21
Get sequence
|
|---|
| Star sequence |
Dpu-Novel-2_3p* |
| mirBase accession | None |
|---|
| Sequence |
45- AUUCUCCAUUACUCCUUUGACGG -68
Get sequence
|
|---|
