| MirGeneDB ID | Dpu-Novel-2 |
|---|---|
| Family name | DPU-NOVEL-2 (all species) |
| Seed | CGUGGAG |
| Species | Common water flea (Daphnia pulex) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | |
| Node of Origin (locus) | D. pulex |
| Node of Origin (family) | D. pulex |
| Genome context (Daphnia_pulex.V1.0) |
DAPPUscaffold_4: 2548779-2548846 [-] Ensembl |
| Precursor (pre-Mir +30nt flank) | ACUAACUUAUUGCACCAAGUGACGUCUUCCUCGUGGAGUAUAGGAGAAUCCCGUAUAUCGUCUGUUUCACUUCUGAUUCUCCAUUACUCCUUUGACGGAGGAUGUCGCAAAUUAUUCAACAUGGCCAUGet precursor sequence |
| Structure | 10 20 30 40 50 60 ACUAACUUAUUGCACCAA-- - U-| UA CCGUAUAUCGU GUGACGUCUUCC UCG GGAGUA GGAGAAUC C CGCUGUAGGAGG AGU CCUCAU CCUCUUAG U UACCGGUACAACUUAUUAAA C UU^ UA UCUUCACUUUG 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | No |
| Mature sequence | Dpu-Novel-2_5p |
| mirBase accession | None |
| Sequence |
0- UCGUGGAGUAUAGGAGAAUCC -21
Get sequence
|
| Star sequence | Dpu-Novel-2_3p* |
| mirBase accession | None |
| Sequence |
45- AUUCUCCAUUACUCCUUUGACGG -68
Get sequence
|
