| MirGeneDB ID | Dpu-Novel-3 |
|---|---|
| Family name | DPU-NOVEL-3 (all species) |
| Seed | ACAUAAU |
| Species | Common water flea (Daphnia pulex) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | |
| Node of Origin (locus) | D. pulex |
| Node of Origin (family) | D. pulex |
| Genome context (Daphnia_pulex.V1.0) |
DAPPUscaffold_87: 490784-490839 [+] Ensembl |
| Clustered miRNAs (< 50kb from Novel-3) |
Mir-96-P3
DAPPUscaffold_87: 475620-475711 [+]
Ensembl
Mir-96-P2-v1 DAPPUscaffold_87: 475817-475879 [+] Ensembl Mir-96-P2-v2 DAPPUscaffold_87: 475818-475878 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | UCUAGGAUGGUGGAUAAGCGUUCUAUGAUGCACAUAAUUUCGAAUGACUGGAUUGUAAUUUUCCCAUUCGUUCGAAAUUGUGACCAUCAUAUUGCGGUUUUUCACUAUCAUCUACGGet precursor sequence |
| Structure | 10 20 30 40 50 UCUAGGAUGGUGGAUAAG--| UC CA C AUUGU CGU UAUGAUG CAUAAUUUCGAAUGA UGG A GCG AUACUAC GUGUUAAAGCUUGCU ACC A GCAUCUACUAUCACUUUUUG^ UU CA U CUUUU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | No |
| Mature sequence | Dpu-Novel-3_5p |
| mirBase accession | None |
| Sequence |
0- CACAUAAUUUCGAAUGACUGG -21
Get sequence
|
| Star sequence | Dpu-Novel-3_3p* |
| mirBase accession | None |
| Sequence |
35- AUUCGUUCGAAAUUGUGACCA -56
Get sequence
|
