MirGeneDB ID | Dpu-Mir-375 |
Family name |
MIR-375 (all species) |
Seed |
UUGUUCG |
Species |
Common water flea (Daphnia pulex) |
MiRBase ID |
dpu-mir-375
|
Paralogues |
|
Orthologues |
Aae-Mir-375
Aca-Mir-375
Ami-Mir-375
Asu-Mir-375
Bfl-Mir-375
Bge-Mir-375
Bla-Mir-375
Bpl-Mir-375
Bta-Mir-375
Cbr-Mir-375
Cel-Mir-375
Cfa-Mir-375
Cgi-Mir-375-P3
Cgi-Mir-375-P4
Cin-Mir-375
Cli-Mir-375
Cpi-Mir-375
Cpo-Mir-375
Csc-Mir-375-P11
Csc-Mir-375-P12
Cte-Mir-375
Dan-Mir-375
Dma-Mir-375
Dme-Mir-375
Dmo-Mir-375
Dno-Mir-375
Dre-Mir-375-P1
Dre-Mir-375-P2
Dsi-Mir-375
Dya-Mir-375
Ebu-Mir-375
Efe-Mir-375
Esc-Mir-375
Ete-Mir-375
Gga-Mir-375
Gja-Mir-375
Gmo-Mir-375-P2
Hme-Mir-375
Hsa-Mir-375
Isc-Mir-375
Lan-Mir-375
Lch-Mir-375
Lgi-Mir-375
Loc-Mir-375
Lpo-Mir-375-P8
Lpo-Mir-375-P9
Lpo-Mir-375-P10
Mal-Mir-375-P2
Mdo-Mir-375
Mml-Mir-375
Mmu-Mir-375
Mun-Mir-375-P7a
Mun-Mir-375-P7b
Npo-Mir-375
Oan-Mir-375
Obi-Mir-375
Ocu-Mir-375
Ovu-Mir-375
Pbv-Mir-375
Pfl-Mir-375
Pma-Mir-375-P5
Pma-Mir-375-P6
Pmi-Mir-375
Rno-Mir-375
Sha-Mir-375
Sko-Mir-375
Spt-Mir-375
Spu-Mir-375
Sto-Mir-375
Tca-Mir-375
Tgu-Mir-375
Tni-Mir-375-P2
Xla-Mir-375-P13
Xla-Mir-375-P14
Xtr-Mir-375
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (Daphnia_pulex.V1.0) |
DAPPUscaffold_28: 221232-221513 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGGAAAAAAGUUUAAAAUAACUGUCUGUUGACUCGAGCUGAUCGUAUAAGCCUGGAGUUUUUAUCGCGCUUCAUGGUGCGAAAAGAUUUCUCGCAACUCUUUCUCCGGCGACGACAUUUUUAUUUUUCGUCUUUCUCUCUCCUGAUUUCUUUUCACCAAUUUUUCUACUGCUGGCGAUUGCAAUCCUGUCGGUUGAAGUUGAAUGGGAGAGAGAAAAGGAGCGAGAGAGACGGGAGUGUGUCGUGAAAAAAGUCGCCGGAGUUGAUGUUGCGGUCACAUUUGCAGUUCGGUUUGUUCGUUCGGCUUGAGUUAGUUUGACAGUCAAAUAGCGUCGGUUAUAGU
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170
UGGAAAAAAGUUUAAAAUA- UG-| U U UGGAGUUUUUAUCGCGCUUCAUGGUGCGAAAAGAUUUCUCGCAACUCUUUCUCCGGCGACGACAUUUUUAUUUUUCGUCUUUCUCUCUCCUGAUUUCUUUUCACCAAUUUUUCUACU
ACUGUC UUGACUCGAGCUGA CG AUAAGCC G
UGACAG GAUUGAGUUCGGCU GC UGUUUGG C
UGAUAUUGGCUGCGAUAAAC UUU^ U U CUUGACGUUUACACUGGCGUUGUAGUUGAGGCCGCUGAAAAAAGUGCUGUGUGAGGGCAGAGAGAGCGAGGAAAAGAGAGAGGGUAAGUUGAAGUUGGCUGUCCUAACGUUAGCGGU
340 330 320 310 300 290 280 270 260 250 240 230 220 210 200 190 180 |
Deep sequencing |
Go to detailed chart
|
Comment | There are Drosha cuts -9 and -10 on the 5p arm. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Dpu-Mir-375_5p* |
mirBase accession | None |
Sequence |
0- ACUCGAGCUGAUCGUAUAAGCC -22
Get sequence
|
Mature sequence |
Dpu-Mir-375_3p |
mirBase accession | MIMAT0012664 |
Sequence |
260- UUUGUUCGUUCGGCUUGAGUUA -282
Get sequence
|