MirGeneDB 3.0
MirGeneDB ID

Dpu-Mir-375

Family name MIR-375 (all species)
Seed UUGUUCG
Species Common water flea (Daphnia pulex)
MiRBase ID dpu-mir-375
Paralogues
Orthologues Aae-Mir-375  Aca-Mir-375  Aga-Mir-375  Agr-Mir-375  Ami-Mir-375  Asu-Mir-375  Ava-Mir-375-P20  Ava-Mir-375-P21  Bfl-Mir-375  Bge-Mir-375  Bko-Mir-375  Bla-Mir-375  Bpl-Mir-375  Bta-Mir-375  Cbr-Mir-375  Cel-Mir-375  Cfa-Mir-375  Cin-Mir-375  Cja-Mir-375  Cli-Mir-375  Cpi-Mir-375  Cpo-Mir-375  Csc-Mir-375-P11  Csc-Mir-375-P12  Cte-Mir-375-P15  Cte-Mir-375-P16  Dan-Mir-375  Dgr-Mir-375  Dlo-Mir-375  Dma-Mir-375  Dme-Mir-375  Dmo-Mir-375  Dno-Mir-375  Dre-Mir-375-P1  Dre-Mir-375-P2  Dsi-Mir-375  Dya-Mir-375  Eba-Mir-375  Ebu-Mir-375  Eca-Mir-375  Efe-Mir-375  Esc-Mir-375  Ete-Mir-375  Gga-Mir-375  Gja-Mir-375  Gmo-Mir-375-P2  Gpa-Mir-375  Hme-Mir-375  Hru-Mir-375  Hsa-Mir-375  Isc-Mir-375  Laf-Mir-375  Lan-Mir-375  Lch-Mir-375  Lgi-Mir-375  Lhy-Mir-375  Llo-Mir-375  Loc-Mir-375  Lpo-Mir-375-P8  Lpo-Mir-375-P9  Lpo-Mir-375-P10  Mal-Mir-375-P2  Mdo-Mir-375  Mgi-Mir-375-P3  Mgi-Mir-375-P4  Mml-Mir-375  Mmr-Mir-375  Mmu-Mir-375  Mom-Mir-375  Mun-Mir-375-P7a  Mun-Mir-375-P7b  Neu-Mir-375  Npo-Mir-375  Oan-Mir-375  Obi-Mir-375  Ocu-Mir-375  Ofu-Mir-375  Ovu-Mir-375  Pab-Mir-375  Pau-Mir-375  Pbv-Mir-375  Pca-Mir-375  Pcr-Mir-375  Pdu-Mir-375  Pfl-Mir-375  Pma-Mir-375-P5  Pma-Mir-375-P6  Pmi-Mir-375  Pve-Mir-375  Rno-Mir-375  Rph-Mir-375-P17a  Rph-Mir-375-P17b  Rph-Mir-375-P17c  Rph-Mir-375-P17d  Rph-Mir-375-P18  Rph-Mir-375-P19a  Rph-Mir-375-P19b  Sha-Mir-375  Sko-Mir-375  Sne-Mir-375  Snu-Mir-375  Spt-Mir-375  Spu-Mir-375  Sto-Mir-375  Tca-Mir-375  Tgu-Mir-375  Tni-Mir-375-P2  Tur-Mir-375  War-Mir-375  Xla-Mir-375-P13  Xla-Mir-375-P14  Xtr-Mir-375 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_28: 221232-221513 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGGAAAAAAGUUUAAAAUAACUGUCUGUUGACUCGAGCUGAUCGUAUAAGCCUGGAGUUUUUAUCGCGCUUCAUGGUGCGAAAAGAUUUCUCGCAACUCUUUCUCCGGCGACGACAUUUUUAUUUUUCGUCUUUCUCUCUCCUGAUUUCUUUUCACCAAUUUUUCUACUGCUGGCGAUUGCAAUCCUGUCGGUUGAAGUUGAAUGGGAGAGAGAAAAGGAGCGAGAGAGACGGGAGUGUGUCGUGAAAAAAGUCGCCGGAGUUGAUGUUGCGGUCACAUUUGCAGUUCGGUUUGUUCGUUCGGCUUGAGUUAGUUUGACAGUCAAAUAGCGUCGGUUAUAGU
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Structure
        10         20         30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
UGGAAAAAAGUUUAAAAUA-      UG-|             U  U       UGGAGUUUUUAUCGCGCUUCAUGGUGCGAAAAGAUUUCUCGCAACUCUUUCUCCGGCGACGACAUUUUUAUUUUUCGUCUUUCUCUCUCCUGAUUUCUUUUCACCAAUUUUUCUACU 
                    ACUGUC   UUGACUCGAGCUGA CG AUAAGCC                                                                                                                     G
                    UGACAG   GAUUGAGUUCGGCU GC UGUUUGG                                                                                                                     C
UGAUAUUGGCUGCGAUAAAC      UUU^             U  U       CUUGACGUUUACACUGGCGUUGUAGUUGAGGCCGCUGAAAAAAGUGCUGUGUGAGGGCAGAGAGAGCGAGGAAAAGAGAGAGGGUAAGUUGAAGUUGGCUGUCCUAACGUUAGCGGU 
340       330       320       310       300       290       280       270       260       250       240       230       220       210       200       190       180
Deep sequencing
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CommentThere are Drosha cuts -9 and -10 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Dpu-Mir-375_5p*
mirBase accessionNone
Sequence 
0- ACUCGAGCUGAUCGUAUAAGCC -22
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Mature sequence

Dpu-Mir-375_3p
mirBase accessionMIMAT0012664
Sequence 
260- UUUGUUCGUUCGGCUUGAGUUA -282
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