Mir-375-P20

MirGeneDB ID

Ava-Mir-375-P20

Family name

MIR-375 (all species)

Seed

UUGUUCG

Species

Bdelloid rotifer (Adineta vaga)

MiRBase ID

Paralogues

Ava-Mir-375-P21

Orthologues

Aae-Mir-375 Aca-Mir-375 Aga-Mir-375 Agr-Mir-375 Ami-Mir-375 Asu-Mir-375 Bfl-Mir-375 Bge-Mir-375 Bko-Mir-375 Bla-Mir-375 Bpl-Mir-375 Bta-Mir-375 Cbr-Mir-375 Cel-Mir-375 Cfa-Mir-375 Cin-Mir-375 Cja-Mir-375 Cli-Mir-375 Cpi-Mir-375 Cpo-Mir-375 Dan-Mir-375 Dgr-Mir-375 Dlo-Mir-375 Dma-Mir-375 Dme-Mir-375 Dmo-Mir-375 Dno-Mir-375 Dpu-Mir-375 Dsi-Mir-375 Dya-Mir-375 Eba-Mir-375 Ebu-Mir-375 Eca-Mir-375 Efe-Mir-375 Esc-Mir-375 Ete-Mir-375 Gga-Mir-375 Gja-Mir-375 Gpa-Mir-375 Hme-Mir-375 Hru-Mir-375 Hsa-Mir-375 Isc-Mir-375 Laf-Mir-375 Lan-Mir-375 Lch-Mir-375 Lgi-Mir-375 Lhy-Mir-375 Llo-Mir-375 Loc-Mir-375 Mdo-Mir-375 Mml-Mir-375 Mmr-Mir-375 Mmu-Mir-375 Mom-Mir-375 Neu-Mir-375 Npo-Mir-375 Oan-Mir-375 Obi-Mir-375 Ocu-Mir-375 Ofu-Mir-375 Ovu-Mir-375 Pab-Mir-375 Pau-Mir-375 Pbv-Mir-375 Pca-Mir-375 Pcr-Mir-375 Pdu-Mir-375 Pfl-Mir-375 Pmi-Mir-375 Pve-Mir-375 Rno-Mir-375 Sha-Mir-375 Sko-Mir-375 Sne-Mir-375 Snu-Mir-375 Spt-Mir-375 Spu-Mir-375 Sto-Mir-375 Tca-Mir-375 Tgu-Mir-375 Tur-Mir-375 War-Mir-375 Xtr-Mir-375

Node of Origin (locus)

A. vaga

Node of Origin (family)

Bilateria

Genome context
(GCA_021613535.1_ASM2161353v1_AVA)

CP075497.1: 10048764-10048825 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GAAAUUUAGUUGCUGAACUUGCGUUUGAUCGUGCGAGUUAGGACGGACAAUGAUGAUGCAUAUGAAUUUCUUUGUUCGUCUGGCUCGUAUUAUUGAUGCAAAGUCUAAAACGACGUUUGAAU

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Structure

        10           20        30        40        50        60 
GAAAUUUAGUUGCUGAAC---|    U UG  C           G        U  UGAUGCA 
                     UUGCG U  AU GUGCGAGUUAG ACGGACAA GA       \
                     AACGU A  UA UAUGCUCGGUC UGCUUGUU CU       U
UAAGUUUGCAGCAAAAUCUGA^    - GU  U           -        U  UUAAGUA 
120       110       100         90        80         70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Sr	Sr

Star sequence

Ava-Mir-375-P20_5p*

mirBase accession

None

Sequence

0- GUGCGAGUUAGGACGGACAAUGA -23

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Mature sequence

Ava-Mir-375-P20_3p

mirBase accession

None

Sequence

40- UUUGUUCGUCUGGCUCGUAUUA -62

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