MirGeneDB 2.1

MirGeneDB ID

Dma-Mir-375

Family name MIR-375 (all species)
Seed UUGUUCG
Species Large common water flea (Daphnia magna)
MiRBase ID
Paralogues
Orthologues Aae-Mir-375  Aca-Mir-375  Ami-Mir-375  Asu-Mir-375  Bfl-Mir-375  Bge-Mir-375  Bla-Mir-375  Bpl-Mir-375  Bta-Mir-375  Cbr-Mir-375  Cel-Mir-375  Cfa-Mir-375  Cgi-Mir-375-P3  Cgi-Mir-375-P4  Cin-Mir-375  Cli-Mir-375  Cpi-Mir-375  Cpo-Mir-375  Csc-Mir-375-P11  Csc-Mir-375-P12  Cte-Mir-375  Dan-Mir-375  Dme-Mir-375  Dmo-Mir-375  Dno-Mir-375  Dpu-Mir-375  Dre-Mir-375-P1  Dre-Mir-375-P2  Dsi-Mir-375  Dya-Mir-375  Ebu-Mir-375  Efe-Mir-375  Esc-Mir-375  Ete-Mir-375  Gga-Mir-375  Gja-Mir-375  Gmo-Mir-375-P2  Hme-Mir-375  Hsa-Mir-375  Isc-Mir-375  Lan-Mir-375  Lch-Mir-375  Lgi-Mir-375  Loc-Mir-375  Lpo-Mir-375-P8  Lpo-Mir-375-P9  Lpo-Mir-375-P10  Mal-Mir-375-P2  Mdo-Mir-375  Mml-Mir-375  Mmu-Mir-375  Mun-Mir-375-P7a  Mun-Mir-375-P7b  Npo-Mir-375  Oan-Mir-375  Obi-Mir-375  Ocu-Mir-375  Ovu-Mir-375  Pbv-Mir-375  Pfl-Mir-375  Pma-Mir-375-P5  Pma-Mir-375-P6  Pmi-Mir-375  Rno-Mir-375  Sha-Mir-375  Sko-Mir-375  Spt-Mir-375  Spu-Mir-375  Sto-Mir-375  Tca-Mir-375  Tgu-Mir-375  Tni-Mir-375-P2  Xla-Mir-375-P13  Xla-Mir-375-P14  Xtr-Mir-375 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(DMA_ASM399081)
NC_046175.1: 1628518-1628758 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UAAAAUGAAAAAAAAAAAAACUGUCUGUUGACUCGAGCUGAUCGUAUAAGCCUGGAGUUUUUUAUCGUGUUUUGUGACACGAGAAAAGAUUUCUCCAACUUCUCUGGCAGUCUUUUUCUUUUUUUUCUCUCUUUUUUCUUCUCGCUUUACUCCAAACUAUAAGAUGAUUGCCAUCUUCCAAUUGAGAGAAGGGUGAGAGGAAGAAAGGGAGGGACGUCAGCAGUUGUUGCGGUCACAUUUUCGAUUCGGUUUGUUCGUUCGGCUUGAGUUAGUUUGACAGUCAACAAUCAUCGUUCGCCAU
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Structure
        10         20         30        40        50        60        70        80        90       100       110       120       130       140          
UAAAAUGAAAAAAAAAAAA-      UG-|             U  U       UGGAGUUUUUUAUCGUGUUUUGUGACACGAGAAAAGAUUUCUCCAACUUCUCUGGCAGUCUUUUUCUUUUUUUUCUCUCUUUUUUCUUCUCGCUUUA 
                    ACUGUC   UUGACUCGAGCUGA CG AUAAGCC                                                                                                 \
                    UGACAG   GAUUGAGUUCGGCU GC UGUUUGG                                                                                                 C
UACCGCUUGCUACUAACAAC      UUU^             U  U       CUUAGCUUUUACACUGGCGUUGUUGACGACUGCAGGGAGGGAAAGAAGGAGAGUGGGAAGAGAGUUAACCUUCUACCGUUAGUAGAAUAUCAAACCU 
 .       290       280       270       260       250       240       230       220       210       200       190       180       170       160
Deep sequencing
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CommentThere are Drosha cuts -9 and -10 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14
Star sequence

Dma-Mir-375_5p*

mirBase accessionNone
Sequence
0- ACUCGAGCUGAUCGUAUAAGCC -22
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Mature sequence

Dma-Mir-375_3p

mirBase accessionNone
Sequence
219- UUUGUUCGUUCGGCUUGAGUUA -241
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