Mir-375-P6

MirGeneDB ID

Pma-Mir-375-P6

Family name

MIR-375 (all species)

Seed

UUGUUCG

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-375b

Paralogues

Pma-Mir-375-P5

Orthologues

Aae-Mir-375 Aca-Mir-375 Ami-Mir-375 Asu-Mir-375 Bfl-Mir-375 Bge-Mir-375 Bla-Mir-375 Bpl-Mir-375 Bta-Mir-375 Cbr-Mir-375 Cel-Mir-375 Cfa-Mir-375 Cin-Mir-375 Cli-Mir-375 Cpi-Mir-375 Cpo-Mir-375 Cte-Mir-375 Dan-Mir-375 Dma-Mir-375 Dme-Mir-375 Dmo-Mir-375 Dno-Mir-375 Dpu-Mir-375 Dsi-Mir-375 Dya-Mir-375 Ebu-Mir-375 Efe-Mir-375 Esc-Mir-375 Ete-Mir-375 Gga-Mir-375 Gja-Mir-375 Hme-Mir-375 Hsa-Mir-375 Isc-Mir-375 Lan-Mir-375 Lch-Mir-375 Lgi-Mir-375 Loc-Mir-375 Mdo-Mir-375 Mml-Mir-375 Mmu-Mir-375 Npo-Mir-375 Oan-Mir-375 Obi-Mir-375 Ocu-Mir-375 Ovu-Mir-375 Pbv-Mir-375 Pfl-Mir-375 Pmi-Mir-375 Rno-Mir-375 Sha-Mir-375 Sko-Mir-375 Spt-Mir-375 Spu-Mir-375 Sto-Mir-375 Tca-Mir-375 Tgu-Mir-375 Xtr-Mir-375

Node of Origin (locus)

P. marinus

Node of Origin (family)

Bilateria

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046078.1: 14800303-14800366 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUCCUCGGCCGCUCCUCUGCGUCUGCGCAACGCCGAGCCCGACGCACAAUGCCUGCUCUGUCACGGCGCGUUUUGUUCGUUCGGCUCGCGUUGCGCAGGCACGGCCACUCGCACCGGCGCCUC

Get precursor sequence

Structure

        10          20        30        40        50        60  
GCUCCUCGGCCGCUCCU--|  C             C     C    C    U  CUGCUCUG 
                   CUG GUCUGCGCAACGC GAGCC GACG ACAA GC        \
                   GGC CGGACGCGUUGCG CUCGG UUGC UGUU UG        U
CUCCGCGGCCACGCUCACC^  A             -     C    U    U  CGCGGCAC 
  120       110       100        90         80        70