MirGeneDB ID | Lpo-Mir-375-P8 |
Family name |
MIR-375 (all species) |
Seed |
UUGUUCG |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Mir-375-P9
Lpo-Mir-375-P10
|
Orthologues |
Aae-Mir-375
Aca-Mir-375
Ami-Mir-375
Asu-Mir-375
Bfl-Mir-375
Bge-Mir-375
Bla-Mir-375
Bpl-Mir-375
Bta-Mir-375
Cbr-Mir-375
Cel-Mir-375
Cfa-Mir-375
Cin-Mir-375
Cli-Mir-375
Cpi-Mir-375
Cpo-Mir-375
Cte-Mir-375
Dan-Mir-375
Dma-Mir-375
Dme-Mir-375
Dmo-Mir-375
Dno-Mir-375
Dpu-Mir-375
Dsi-Mir-375
Dya-Mir-375
Ebu-Mir-375
Efe-Mir-375
Esc-Mir-375
Ete-Mir-375
Gga-Mir-375
Gja-Mir-375
Hme-Mir-375
Hsa-Mir-375
Isc-Mir-375
Lan-Mir-375
Lch-Mir-375
Lgi-Mir-375
Loc-Mir-375
Mdo-Mir-375
Mml-Mir-375
Mmu-Mir-375
Npo-Mir-375
Oan-Mir-375
Obi-Mir-375
Ocu-Mir-375
Ovu-Mir-375
Pbv-Mir-375
Pfl-Mir-375
Pmi-Mir-375
Rno-Mir-375
Sha-Mir-375
Sko-Mir-375
Spt-Mir-375
Spu-Mir-375
Sto-Mir-375
Tca-Mir-375
Tgu-Mir-375
Xtr-Mir-375
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013667945.1: 151616-151674 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUAAACAACAGAAUAGUCAUCUGCUACCUGACUUGAGUCUUUCGAGCAGAACUUUGAAAAAAAAUGUUUUGUUCGUUCGGCUCGAGUCAGAAAGUAGUUAAAAAUCAUCGAUUUCACCA
Get precursor sequence
|
Structure | 10 20 30 40 50
CUAAACAACAGAAUAGUCAU--| AC UUU UUUGAA
CUGCU CUGACUUGAGUC CGAGCAGAAC \
GAUGA GACUGAGCUCGG GCUUGUUUUG A
ACCACUUUAGCUACUAAAAAUU^ AA CUU UAAAAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There are Drosha cuts -1, +1 and +2 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Lpo-Mir-375-P8_5p* |
mirBase accession | None |
Sequence |
0- ACUUGAGUCUUUCGAGCAGAAC -22
Get sequence
|
Mature sequence |
Lpo-Mir-375-P8_3p |
mirBase accession | None |
Sequence |
37- UUUGUUCGUUCGGCUCGAGUCA -59
Get sequence
|