| MirGeneDB ID | Tca-Mir-965 |
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| Family name |
MIR-965 (all species) |
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| Seed |
AAGCGUA |
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| Species |
Red flour beetle (Tribolium castaneum) |
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| MiRBase ID |
tca-mir-965
|
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| Paralogues |
|
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| Orthologues |
Aae-Mir-965
Bge-Mir-965
Dan-Mir-965
Dma-Mir-965
Dme-Mir-965
Dmo-Mir-965
Dpu-Mir-965
Dsi-Mir-965
Dya-Mir-965
Hme-Mir-965
|
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| Node of Origin (locus) |
Pancrustacea
|
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| Node of Origin (family) |
Pancrustacea
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Genome context
(Tcas5.2) |
LG5: 8315316-8315375 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GGCAAUGGGCGCGCUCCGAUUGGACCCUGGGGUGGAAAGUUGUACCGCUGAUGGUGAUUUUUCUACACAUAAGCGUAUAGCUUUUCCCCUUUGGUUCCAAUCACGACGAUCUCCAGCCGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GGCAAUGGGCGCGCUCC- -| CU U C G GUGAUU
GAUUGG ACC GGGG GGAAAGUUGUAC GCU AUG U
CUAACC UGG UCCC CUUUUCGAUAUG CGA UAC U
AGCCGACCUCUAGCAGCA U^ UU - - A ACAUCU
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
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| Ad |
Ea |
Em |
Em |
Em |
Em |
Em |
Fe |
Fe |
Fe |
Fe |
Oo |
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| Star sequence |
Tca-Mir-965_5p* |
| mirBase accession | MIMAT0019183 |
|---|
| Sequence |
0- GGUGGAAAGUUGUACCGCUGAUG -23
Get sequence
|
|---|
| Mature sequence |
Tca-Mir-965_3p |
| mirBase accession | MIMAT0010095 |
|---|
| Sequence |
39- UAAGCGUAUAGCUUUUCCCCU -60
Get sequence
|
|---|
