MirGeneDB ID | Sne-Mir-36-P22 |
Family name |
MIR-36 (all species) |
Seed |
CACCGGG |
Species |
Seison (Seison nebaliae) |
MiRBase ID |
|
Paralogues |
Sne-Mir-36-P21
|
Orthologues |
Agr-Mir-36
Bge-Mir-36
Cbr-Mir-36-o22
Cte-Mir-36
Dgr-Mir-36
Dlo-Mir-36
Dma-Mir-36
Dpu-Mir-36
Eba-Mir-36
Gsp-Mir-36
Isc-Mir-36
Lhy-Mir-36
Llo-Mir-36
Mgi-Mir-36
Mom-Mir-36
Npo-Mir-36
Ofu-Mir-36
Pau-Mir-36
Pcr-Mir-36
Pdu-Mir-36
Pve-Mir-36
Rph-Mir-36
Snu-Mir-36
Tca-Mir-36
War-Mir-36
|
Node of Origin (locus) |
S. nebaliae
|
Node of Origin (family) |
Protostomia
|
Genome context (S.nebaliae-strainB-GA2.2-3295Contigs_manual) |
k141_5132: 25589-25695 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAUUUCAAUUCAAAUCGAAGAUUCAUUGCUGGAGAGUGUAUCUACGGGUCGACAUUGUCUUUGUACUCAUUCUUUUUAUAAGAAUUGUCAAGAAUUUAUUCUUCUUACUUUAUGUCACCGGGUACUACACUUUCCCACAAAGAUUCCUUCAUCUCAUCAUUCAUUUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70 80
CAUUUCAAUUCAAAUCGAA--| U A CU UC G- C UUGUCUUUGUACUCAUUCUUUUUAUAAG
GA UC UUG GGAGAGUGUA UAC GGU GACA A
CU AG AAC CCUUUCACAU AUG CCA CUGU A
AUUUACUUACUACUCUACUUC^ U A AC C- GG - AUUUCAUUCUUCUUAUUUAAGAACUGUU
160 150 140 130 120 110 100 90 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Sne-Mir-36-P22_5p* |
mirBase accession | None |
Sequence |
0- GGAGAGUGUAUCUACGGGUCGACA -24
Get sequence
|
Mature sequence |
Sne-Mir-36-P22_3p |
mirBase accession | None |
Sequence |
84- UCACCGGGUACUACACUUUCCCA -107
Get sequence
|